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Hi Charlie,<br>
<br>
The transcript ENSMUST00000198176 has a biotype TEC, which stands
for To Be Experimentally Confirmed.<br>
Due to its ambiguous nature, transcripts of that biotype are not
part of any of our biotype classifications, hence not dumped out in
the FASTA files.<br>
<br>
We are currently reviewing this decision and might be able to
provide the sequence in future releases.<br>
<br>
<br>
Kind regards,<br>
Magali<br>
<br>
<div class="moz-cite-prefix">On 10/05/2017 04:57, Charles Joseph
Murphy wrote:<br>
</div>
<blockquote
cite="mid:B0F4D7E8-4036-4DCA-92D7-9A64321C2B5E@med.cornell.edu"
type="cite">
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Hi,
<div class=""><br class="">
</div>
<div class="">I notices that for GRCm38 release 88 the sequence
for the transcript ENSMUST00000198176 is not present in any of
the following files:</div>
<div class=""><br class="">
</div>
<div class=""><a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/ncrna//Mus_musculus.GRCm38.ncrna.fa.gz"
class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/ncrna//Mus_musculus.GRCm38.ncrna.fa.gz</a></div>
<div class=""><a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.abinitio.fa.gz"
class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.abinitio.fa.gz</a></div>
<div class=""><a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.all.fa.gz"
class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.all.fa.gz</a></div>
<div class=""><a moz-do-not-send="true"
href="ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus//cds/Mus_musculus.GRCm38.cds.all.fa.gz"
class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus//cds/Mus_musculus.GRCm38.cds.all.fa.gz</a></div>
<div class=""><br class="">
</div>
<div class="">What is the reason?</div>
<div class=""><br class="">
</div>
<div class="">Thanks,</div>
<div class="">Charlie</div>
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<br>
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</blockquote>
<br>
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