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Thanks, Magali.
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<div class="">However running the following command:</div>
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<div class="">gzip -cd Mus_musculus.GRCm38.ncrna.fa.gz | grep 'transcript_biotype:TEC' | wc -l</div>
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<div class="">I get 33 transcripts that also have the TEC classification?</div>
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<div class="">Charlie</div>
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<div class="">On May 10, 2017, at 04:33, mag <<a href="mailto:mr6@ebi.ac.uk" class="">mr6@ebi.ac.uk</a>> wrote:</div>
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<div bgcolor="#FFFFFF" text="#000000" class="">Hi Charlie,<br class="">
<br class="">
The transcript ENSMUST00000198176 has a biotype TEC, which stands for To Be Experimentally Confirmed.<br class="">
Due to its ambiguous nature, transcripts of that biotype are not part of any of our biotype classifications, hence not dumped out in the FASTA files.<br class="">
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We are currently reviewing this decision and might be able to provide the sequence in future releases.<br class="">
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Kind regards,<br class="">
Magali<br class="">
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<div class="moz-cite-prefix">On 10/05/2017 04:57, Charles Joseph Murphy wrote:<br class="">
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<blockquote cite="mid:B0F4D7E8-4036-4DCA-92D7-9A64321C2B5E@med.cornell.edu" type="cite" class="">
Hi,
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<div class="">I notices that for GRCm38 release 88 the sequence for the transcript ENSMUST00000198176 is not present in any of the following files:</div>
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<div class=""><a moz-do-not-send="true" href="https://urldefense.proofpoint.com/v2/url?u=ftp-3A__ftp.ensembl.org_pub_release-2D88_fasta_mus-5Fmusculus_ncrna__Mus-5Fmusculus.GRCm38.ncrna.fa.gz&d=DwMD-g&c=lb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s&r=O3yXKBF_L8Fov58BXORGXKqPP85pYddrOwCg4PV2BCY&m=6_8p0CcRADDFEUqXX8FZ2k2yCjJHyoxyDfHQ_BEN7iY&s=P8Crx2lb50Z2HaGvcFsC2Weh3Whyyf-E5EfjCV5nnBE&e=" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/ncrna//Mus_musculus.GRCm38.ncrna.fa.gz</a></div>
<div class=""><a moz-do-not-send="true" href="https://urldefense.proofpoint.com/v2/url?u=ftp-3A__ftp.ensembl.org_pub_release-2D88_fasta_mus-5Fmusculus_cdna__Mus-5Fmusculus.GRCm38.cdna.abinitio.fa.gz&d=DwMD-g&c=lb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s&r=O3yXKBF_L8Fov58BXORGXKqPP85pYddrOwCg4PV2BCY&m=6_8p0CcRADDFEUqXX8FZ2k2yCjJHyoxyDfHQ_BEN7iY&s=tDsckNxZwOc8DGrkbozqkxlB_0CyDw-u4F7tq59jABo&e=" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.abinitio.fa.gz</a></div>
<div class=""><a moz-do-not-send="true" href="https://urldefense.proofpoint.com/v2/url?u=ftp-3A__ftp.ensembl.org_pub_release-2D88_fasta_mus-5Fmusculus_cdna__Mus-5Fmusculus.GRCm38.cdna.all.fa.gz&d=DwMD-g&c=lb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s&r=O3yXKBF_L8Fov58BXORGXKqPP85pYddrOwCg4PV2BCY&m=6_8p0CcRADDFEUqXX8FZ2k2yCjJHyoxyDfHQ_BEN7iY&s=cUXvnj8Qd9pSX5NUl-rGoRNl9s2MHFv_vDaIVQXSnYU&e=" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.all.fa.gz</a></div>
<div class=""><a moz-do-not-send="true" href="https://urldefense.proofpoint.com/v2/url?u=ftp-3A__ftp.ensembl.org_pub_release-2D88_fasta_mus-5Fmusculus__cds_Mus-5Fmusculus.GRCm38.cds.all.fa.gz&d=DwMD-g&c=lb62iw4YL4RFalcE2hQUQealT9-RXrryqt9KZX2qu2s&r=O3yXKBF_L8Fov58BXORGXKqPP85pYddrOwCg4PV2BCY&m=6_8p0CcRADDFEUqXX8FZ2k2yCjJHyoxyDfHQ_BEN7iY&s=T9BHw_4iBxATgBz_7LrLwLxwKYmtoH8XDM07ocYQPNI&e=" class="">ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus//cds/Mus_musculus.GRCm38.cds.all.fa.gz</a></div>
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<div class="">What is the reason?</div>
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<div class="">Thanks,</div>
<div class="">Charlie</div>
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