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<p>Hi Lee</p>
<p>Please do not email both helpdesk and dev with the same message.
You have wasted Anja's time by making her help you when I had
already solved your problem.</p>
<p>All the best</p>
<p>Emily<br>
</p>
<br>
<div class="moz-cite-prefix">On 16/05/2017 13:30, Lee Stopak wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAEkDndLDraL3brz685p9PU0txKjj3g1PvH=b6Nf62_cQMMPhkw@mail.gmail.com">
<div dir="ltr">Hi Anja,
<div><br>
</div>
<div>I have got it working. I had the packages set up
incorrectly at the top. </div>
<div><br>
</div>
<div>Thanks anyways :)</div>
<div><br>
</div>
<div>Lee</div>
</div>
<div class="gmail_extra"><br>
<div class="gmail_quote">On Tue, May 16, 2017 at 1:37 PM, Anja
Thormann <span dir="ltr"><<a href="mailto:anja@ebi.ac.uk"
target="_blank" moz-do-not-send="true">anja@ebi.ac.uk</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word">Hello Lee,
<div><br>
</div>
<div>could you please share the code that you are running
to retrieve the variant data? It looks to me as if the
variation adaptor is not defined.</div>
<div><br>
</div>
<div>Thank you,</div>
<div>Anja</div>
<div><br>
</div>
<div>
<div>
<blockquote type="cite">
<div>
<div class="h5">
<div>On 11 May 2017, at 17:56, Lee Stopak <<a
href="mailto:lee.stopak@ada.com"
target="_blank" moz-do-not-send="true">lee.stopak@ada.com</a>>
wrote:</div>
<br
class="m_-3855058432788321931Apple-interchange-newline">
</div>
</div>
<div>
<div>
<div class="h5">
<div dir="ltr"><span style="font-size:12.8px">Hi
all, </span>
<div style="font-size:12.8px"><br>
</div>
<div style="font-size:12.8px">I have just
installed BioPerl to use Ensembl API to
access SNP information that I need for a
project that I am working on. I have
followed all the prompts, and am trying to
use the sample code to access variants,
using the ‘fetch_by_name’ function.
However, I am getting an error response: </div>
<div style="font-size:12.8px"><br>
</div>
<div style="font-size:12.8px">
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-variant-ligatures:no-common-ligatures">Can't call method
"fetch_by_name" on an undefined value</span></div>
</div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-variant-ligatures:no-common-ligatures"><br>
</span></div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-family:helvetica;font-size:12px">Many other functions are
working and running, for example getting
by chromosome ID. Can somebody give me
some advice on why this is happening?</span></div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-family:helvetica;font-size:12px"><br>
</span></div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-family:helvetica;font-size:12px">Thank you, </span></div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-family:helvetica;font-size:12px"><br>
</span></div>
<div
style="margin:0px;font-size:11px;line-height:normal;font-family:menlo"><span
style="font-family:helvetica;font-size:12px">Lee</span></div>
</div>
</div>
</div>
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</blockquote>
</div>
<br>
</div>
</div>
<br>
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</blockquote>
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<pre wrap="">_______________________________________________
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Dr Emily Perry (Pritchard)
Ensembl Outreach Project Leader
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK </pre>
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