<div dir="ltr">Hi Guillermo,<div><br></div><div>If you pull release/88 you will by default get the latest sub-version (88.9). You may check out specific sub-versions e.g. release/88.x; these are tags on the git repo to aid reproducibility.</div><div><br></div><div>Will</div></div><div class="gmail_extra"><br><div class="gmail_quote">On 24 May 2017 at 07:45, Guillermo Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@sistemasgenomicos.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  
    
  
  <div text="#000066" bgcolor="#FFFFFF">
    <p>Hi Will,</p>
    <p>Thank you for the quick fix. Should we wait for the changes in
      release/88.9 to be merged in release/88 or will they be merged in
      release 89? Or work with release 88.9?<br>
    </p>
    <p>Regards,<br>
    </p><div><div class="h5">
    <br>
    <div class="m_-8060000959423497322moz-cite-prefix">On 05/22/2017 04:21 PM, Will McLaren
      wrote:<br>
    </div>
    <blockquote type="cite">
      <div dir="ltr">Hi Guillermo,
        <div><br>
        </div>
        <div>Thanks for spotting this. The issue is fixed in ensembl-vep
          88.9 (<a href="https://github.com/Ensembl/ensembl-vep/commit/21069f158e4081ffc44d5389852a0e3da71fd7ff" target="_blank">https://github.com/Ensembl/<wbr>ensembl-vep/commit/<wbr>21069f158e4081ffc44d5389852a0e<wbr>3da71fd7ff</a>).</div>
        <div><br>
        </div>
        <div>Regards</div>
        <div><br>
        </div>
        <div>Will McLaren</div>
        <div>Ensembl Variation</div>
      </div>
      <div class="gmail_extra"><br>
        <div class="gmail_quote">On 17 May 2017 at 07:45, Guillermo
          Marco Puche <span dir="ltr"><<a href="mailto:guillermo.marco@sistemasgenomicos.com" target="_blank">guillermo.marco@<wbr>sistemasgenomicos.com</a>></span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
            <div bgcolor="#FFFFFF" text="#000066">
              <p>Dear devs,</p>
              <p>I've noticed a bug in latest VEP 88 version. If you
                activate more than one plugin, one in the config file
                and other directly in command line all the annotation
                fields produced by plugins are rendered empty. See the
                example below (my.conf would be the config file
                containing a line activating plugin):<br>
              </p>
              <pre><b>vep -i input.vcf -o output.vcf -config my.conf -dir_plugins  dir_plugins -dir_cache .vep -plugin Test</b><b>
</b></pre>
              <p>I've managed to make this work "calling" all the
                plugins from command line.</p>
              <p>Regards,<br>
                Guillermo<br>
              </p>
              <p><br>
              </p>
            </div>
            <br>
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            <br>
          </blockquote>
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        <br>
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  </div></div></div>

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