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<p>Hi Mahmood</p>
<p>The main thing that Bio::DB::HTS depends on that is outside of
Perl, so if you could do a ls $HTSLIB_DIR, and some of the error
messages, that would be helpful. There are issues on the latest
Mac OS that mean the latest HTSlib may not have compiled
correctly. If you run 'perl INSTALL.pl' the script will attempt to
download and build an earlier HTSlib automatically.<br>
</p>
<p>You can find further guidance at the readme file for Bio::DB::HTS
at <a class="moz-txt-link-freetext" href="https://github.com/Ensembl/Bio-DB-HTS">https://github.com/Ensembl/Bio-DB-HTS</a>. </p>
<p>Regards</p>
<p>Rishi<br>
</p>
<br>
<div class="moz-cite-prefix">On 25/06/2017 14:34, Mahmood Naderan
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CADa2P2WLAHZCjPYxxDdEObGc3rcNnHOdynq_=N-Kgtn01zZUow@mail.gmail.com">
<div dir="ltr">
<div class="gmail_default" style="font-family:tahoma,sans-serif">Hi,<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">I
am trying to install the perl api via the instructions at <a
href="http://www.ensembl.org/info/docs/api/api_installation.html"
moz-do-not-send="true">http://www.ensembl.org/info/docs/api/api_installation.html</a><br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">At
the step where I am going to run 'perl Build.PL' I get a lot
of errors regarding the dependencies and it seems that perl is
not going to automatically resolve them. The repository is now
a mess! and there are many failed packages which I give them
up!<br>
<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">Please
let me know which prerequisite packages should I install for
Bio-DB-HTS.<br>
<br>
</div>
<div>
<div class="gmail_signature">
<div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>
Mahmood</font><br>
<br>
<br>
</div>
</div>
</div>
</div>
<br>
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</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Interim Coordinator with Data and Security Working Groups,
Global Alliance for Genomics and Health</pre>
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