<html><head><style>body{font-family:Helvetica,Arial;font-size:13px}</style></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">Hi Giuseppe,</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">Currently no, there’s no easy way to merge the statistics across separate VEP runs.</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">If you use the -stats_text flag, this gives you a text-based stats file that you may find easier to merge across runs, but then you would have to generate the charts yourself from the data in these files; this should be fairly straightforward in any spreadsheet package, however.</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">Regards</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;"><br></div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">Will McLaren</div><div id="bloop_customfont" style="font-family:Helvetica,Arial;font-size:13px; color: rgba(0,0,0,1.0); margin: 0px; line-height: auto;">Ensembl Variation</div> <br> <div id="bloop_sign_1498475221104897024" class="bloop_sign"></div> <br><p class="airmail_on">On 26 June 2017 at 09:39:00, Giuseppe Gallone (<a href="mailto:gg14@sanger.ac.uk">gg14@sanger.ac.uk</a>) wrote:</p> <blockquote type="cite" class="clean_bq"><span><div><div></div><div>Hi
<br>
<br>I'm running per-chromosome VEP jobs on a cluster and noticed it is
<br>possible to produce tidy html summary stats/plots alongside the actual
<br>per-chromosome vcf outputs.
<br>
<br>Is there a way to produce one such plot to summarise results for all
<br>chromosomes, short of running a huge vep job across all chromosomes?
<br>
<br>I guess what I'm asking is if there is a way to save per-chromosome plot
<br>data and then summarise the results in a master html file.
<br>
<br>Best wishes,
<br>
<br>Giuseppe
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