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<p>Hi Mahmood</p>
<p>The use of cpanm (which should be easier than cpan) may help
here.</p>
<p>In addition, one of the reasons why things get installed manually
is to allow for the fact that it is easier to download BioPerl at
the version the Ensembl API is compatible with than install via
cpanm, as it usually is quite a long process and frequently throws
up errors. Bio::Root::Version is part of BioPerl 1.6 and so I
suspect these errors stem from the BioPerl not being downloaded or
the PERL5LIB not being correct, which is causing the attempt to
re-download and install BioPerl giving the huge number of errors
you are experiencing, <br>
</p>
<p>Regards</p>
<p>Rishi<br>
</p>
<br>
<div class="moz-cite-prefix">On 26/06/2017 11:13, Mahmood Naderan
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CADa2P2UC8s5R=xSfYasSP=Ei-asZWHMpjSS32qSwP5ubQeP+MA@mail.gmail.com">
<div dir="ltr">
<div class="gmail_default" style="font-family:tahoma,sans-serif">OK.
I installed Module::Build and its dependency
ExtUtils::CBuilder with the yum command!<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">yum
install perl-Module-Build perl-ExtUtils-CBuilder<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">Still
the command 'perl Build.PL' complains about
Bio::Root::Version. Unfortunately, that is not available on
the yum repositories and I have to manually install it!<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">As
I run 'cpan Bio::Root::Version', it complains about
DBD::SQLite, Bio::DB::GFF, LWP::UserAgent and other things...<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">My
serious question is that, why it doesn't download the packages
automatically? it is a pain then!<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif"><br>
<br>
</div>
<div class="gmail_extra"><br clear="all">
<div>
<div class="gmail_signature"
data-smartmail="gmail_signature">
<div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>
Mahmood</font><br>
<br>
</div>
</div>
</div>
<br>
</div>
</div>
<br>
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</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Interim Coordinator with Data and Security Working Groups,
Global Alliance for Genomics and Health</pre>
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