<div dir="ltr">H<div style="font-family:tahoma,sans-serif;display:inline" class="gmail_default">​i,<br></div><div style="font-family:tahoma,sans-serif;display:inline" class="gmail_default">Thank you very much. It seems that I missed an export in the previous step. ​</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>Mahmood</font><br><br><br></div></div></div>
<br><div class="gmail_quote">On Wed, Jun 28, 2017 at 1:19 AM, Zhicheng Liu <span dir="ltr"><<a href="mailto:zl@ebi.ac.uk" target="_blank">zl@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word"><div>Hi Mahmood,</div><div><br></div><div>Have you tried following the item “3. Set up your environment” under the “Installation Procedure” section on this page? </div><div><a href="http://www.ensembl.org/info/docs/api/api_installation.html" target="_blank">http://www.ensembl.org/info/<wbr>docs/api/api_installation.html</a></div><div><br></div><div>The Bio/EnsEMBL/Registry.pm should be located at ${HOME}/src/ensembl/modules.</div><div><br></div><div>Hope this helps!</div><div><br></div><div>Regards,</div><div>Zhicheng</div><div>.</div><br><div><blockquote type="cite"><div><div class="h5"><div>On 27 Jun 2017, at 20:27, Mahmood Naderan <<a href="mailto:mahmood.nt@gmail.com" target="_blank">mahmood.nt@gmail.com</a>> wrote:</div><br class="m_6849636434738630156Apple-interchange-newline"></div></div><div><div><div class="h5"><div dir="ltr"><div class="gmail_default" style="font-family:tahoma,sans-serif">Hello,<br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">I finished installing the API according to <a href="http://www.ensembl.org/info/docs/api/api_installation.html" target="_blank">http://www.ensembl.org/info/<wbr>docs/api/api_installation.html</a><br><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">As I wrote a simple script to connect to the database, I get this error<br><br>Can't locate Bio/EnsEMBL/Registry.pm in @INC (@INC contains: /opt/perl/lib/site_perl/5.14.<wbr>2/x86_64-linux-thread-multi /opt/perl/lib/site_perl/5.14.2 /opt/perl/lib/5.14.2/x86_64-<wbr>linux-thread-multi /opt/perl/lib/5.14.2 .) at <a href="http://test.pl/" target="_blank">test.pl</a> line 1.<br>BEGIN failed--compilation aborted at <a href="http://test.pl/" target="_blank">test.pl</a> line 1.<br><br><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">That is correct because there is no Bio::EnsEMBL in the cpan list.<br><br>[root@cluster ~]# /opt/perl/bin/cpan -a | grep Bio::EnsEMBL<br>[root@cluster ~]#<br><br><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">It has not been stated in the installation guide that such package is needed. What should I do? <br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">Is it OK to run "cpanm Bio::EnsEMBL::Registry"? I want to be sure that it is safe to do that.<br><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif">P.S: Sorry for sending a lot of questions. These may seems obvious and easy to solve, but for a newbie it takes a while to boot!<br><br></div><div class="gmail_default" style="font-family:tahoma,sans-serif"><br clear="all"></div><div><div class="m_6849636434738630156gmail_signature"><div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>Mahmood</font><br><br><br></div></div></div>
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