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Dear Mahmood,<br>
<br>
Gene objects have a strand method<br>
<a class="moz-txt-link-freetext" href="http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Feature.html#a5d303af70a7c8429e9eb7d66b5065f47">http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Feature.html#a5d303af70a7c8429e9eb7d66b5065f47</a><br>
<br>
<br>
Hope that helps,<br>
Magali<br>
<br>
<div class="moz-cite-prefix">On 02/07/2017 18:45, Mahmood Naderan
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CADa2P2V5HS1freC97S3s01nBO_hdPC0sw+aPcp0BiRrkLWq3Jw@mail.gmail.com">
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<div class="gmail_default" style="font-family:tahoma,sans-serif">Hello,<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">I
use <br>
my @genes = @{
$gene_adaptor->fetch_all_by_external_name("SYN2") };<br>
my $gene = @genes[0];<br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">to
get the sequence. How can I check if the gene is forward or
backward strand? I see BaseAlignFeature::strands_reversed but
I can not call it with gene-><br>
<br>
</div>
<div class="gmail_default" style="font-family:tahoma,sans-serif">Is
there any example for that?<br>
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<div>
<div class="gmail_signature">
<div dir="ltr"><font face="tahoma,sans-serif">Regards,<br>
Mahmood</font><br>
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