<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">
Hello,
<div class=""><br class="">
</div>
<div class="">I’m trying to look at the transcript consequences of the following variant:</div>
<div class="">17:g.7577607_7578174del</div>
<div class=""><br class="">
</div>
<div class="">using the REST API like this:</div>
<div class=""><a href="http://grch37.rest.ensembl.org/vep/human/hgvs/17:g.7577607_7578174del?content-type=application/json;xref_refseq=1&canonical=1&ccds=1&hgvs=1" class="">http://grch37.rest.ensembl.org/vep/human/hgvs/17:g.7577607_7578174del?content-type=application/json;xref_refseq=1&canonical=1&ccds=1&hgvs=1</a></div>
<div class=""><br class="">
</div>
<div class="">This is what I get for one of the transcripts:</div>
<div class="">ENST00000269305.4:c.674_672+3delCTGG….</div>
<div class=""><br class="">
</div>
<div class="">Shouldn’t the correct syntax be ENST00000269305.4:c.<b class="">672+3_674</b>delCTGG..?</div>
<div class=""><br class="">
</div>
<div class="">(Other transcript consequences for this variant appear to have a similar issue - ENST00000504290.1:n.556_554+3delCTGGT…)</div>
<div class=""><br class="">
</div>
<div class="">I get the same result using the VEP web interface.</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">Regards,</div>
<div class="">Bhavana</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class=""><br class="">
</div>
<div class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<br class="Apple-interchange-newline">
---------------------------------------------<br class="">
Bhavana Harsha<br class="">
Bioinformatician<br class="">
COSMIC<br class="">
Wellcome Trust Sanger Institute<br class="">
Hinxton, UK<br class="">
CB10 1SA<br class="">
</div>
<div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
<br class="">
</div>
<br class="Apple-interchange-newline">
</div>
<br class="">
</body>
</html>