<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Dan,<br class=""><div class="">Yes it is the best solution in the actual schema. We have ‘haplotype’ which might be better, it works the same but with a different name. If there is a new assembly, an assembly patch would be part of the new assembly. The relationship is only based on the reference. If you have: reference, phase1, phase2 you will be able to show: reference <-> phase1, reference <-> phase2. But I don’t think you will be able to show phase1 <-> phase2 on the website. In theory the API can probably manage phase1 <-> phase2 but I don’t think we’ve ever tried it.</div><div class=""><br class=""></div><div class="">Thanks</div><div class="">Thibaut</div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 16 Oct 2017, at 15:08, Dan Bolser <<a href="mailto:dbolser@ebi.ac.uk" class="">dbolser@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><br class=""><div class="gmail_extra"><br class=""><div class="gmail_quote">On 16 October 2017 at 14:40, Dan Bolser <span dir="ltr" class=""><<a href="mailto:dbolser@ebi.ac.uk" target="_blank" class="">dbolser@ebi.ac.uk</a>></span> wrote:<br class=""><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr" class="">Hi,<div class=""><br class=""></div><div class="">We have a genome assembly where several scaffolds have been identified as different phases of a *heterozygous* diploid individual.</div></div></blockquote><div class=""><br class=""></div><div class="">Spell chequer FTW!</div><div class=""><br class=""></div><div class=""><br class=""></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr" class=""><div class="">How best to represent these in Ensembl? As assembly patches?<br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">Many thanks,</div><div class="">Dan.</div></div>
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