<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hello Jessie,<div class=""><br class=""></div><div class="">homo_sapiens.vcf contains SNVs and indels.</div><div class=""><br class=""></div><div class="">CNVs are contained in homo_sapiens_structural_variations.vcf. The SVTYPE in the info field for CNVs is copy_number_variation, copy_number_gain or copy_number_loss.</div><div class=""><br class=""></div><div class="">Best,</div><div class="">Anja</div><div class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 20 Dec 2017, at 16:30, Jessie Poquérusse <<a href="mailto:jessie.poquerusse@gmail.com" class="">jessie.poquerusse@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class="gmail_default" style="font-family:trebuchet ms,sans-serif"><div dir="ltr" class=""><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Hello!</div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif"><br class=""></div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Does
your homo_sapiens.vcf.gz file contain SNVs and indels? What about CNVs?
I am trying to get ahold of all common SNVs, indels, CNVs and
structural variations (the latter being clearly covered by your
homo_sapiens_structural_<wbr class="">variations.vcf.gz file).</div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif"><br class=""></div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Thanks!</div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif"><br class=""></div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Best,</div><div class="gmail_default" style="font-family:trebuchet ms,sans-serif">Jessie <div class="gmail-adL"><br class=""></div></div></div></div></div>
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