<div dir="ltr"><div>Dear Matthew,</div><div><br></div><div>Thanks a lot for your answer.</div><div><br></div><div>We are still in installation process of private ensemble server. We will post if we have any further issues.</div><div><br></div><div>Thanks & Regards</div><div>Fazulur Rehaman</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Jan 12, 2018 at 4:14 PM, Matthew Laird <span dir="ltr"><<a href="mailto:lairdm@ebi.ac.uk" target="_blank">lairdm@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
  
    
  
  <div bgcolor="#FFFFFF" text="#000000">
    Hi Fazulur,<br>
    <br>
    I've raised the issue with the appropriate teams that yes we have
    local installation instructions but we don't have release to release
    upgrade instructions. To upgrade from one release to the next:<br>
    <br>
    - download and install the latest database versions of the species
    you want in your local installation, as per the installation
    instructions<br>
    - for each of the ensembl* git repositories, in the directory for
    that repository run: git fetch; git checkout release/91 (where you
    replace the 91 with whichever new version in the future)<br>
    - delete everything in the conf/packed directory for the web code<br>
    - restart the web server, as per the installation instructions<br>
    <br>
    If you have any trouble with this, please let us know and we'll try
    to assist you.<br>
    <br>
    Cheers.<div><div class="h5"><br>
    <br>
    <div class="m_-3239872116264969872moz-cite-prefix">On 11/01/18 06:47, Rehaman wrote:<br>
    </div>
    <blockquote type="cite">
      <div dir="ltr">
        <div>Dear Ensembl team,</div>
        <div><br>
        </div>
        <div>Thanks a lot for quick response.</div>
        <div><br>
        </div>
        <div>I have one more question.</div>
        <div>Could you please let me know how to update our private
          server for next Ensembl's release. </div>
        <div><br>
        </div>
        <div>Thanks & Regards</div>
        <div>Fazulur Rehaman</div>
        <div><br>
        </div>
        <div>Thanks & Regards</div>
        <div>Fazulur Rehaman</div>
      </div>
      <div class="gmail_extra"><br>
        <div class="gmail_quote">On Wed, Jan 10, 2018 at 4:40 PM,
          Matthew Laird <span dir="ltr"><<a href="mailto:lairdm@ebi.ac.uk" target="_blank">lairdm@ebi.ac.uk</a>></span>
          wrote:<br>
          <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
            <div bgcolor="#FFFFFF" text="#000000"> Hello Rehaman,<br>
              <br>
              Unfortunately I think you've misunderstood what the
              installation instructions are trying to say. We no longer
              recommend the local installation of BioMart as part of a
              local mirror, and when the documentation says to link to a
              public BioMart, it means to run your queries against a
              public BioMart and Ensembl database. There isn't a way to
              have our public BioMart instances talk to your private
              server. If you need to do large queries against a local
              Ensembl mirror, you're better off using the API in that
              case.<br>
              <br>
              Please let us know if you have any further questions.
              Cheers.
              <div>
                <div class="m_-3239872116264969872h5"><br>
                  <br>
                  <div class="m_-3239872116264969872m_-1050681698239178095moz-cite-prefix">On
                    10/01/18 10:46, Rehaman wrote:<br>
                  </div>
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                  <div class="m_-3239872116264969872h5">
                    <div dir="ltr">
                      <div>Dear Team,</div>
                      <div><br>
                      </div>
                      <div>We are configuring Ensembl mirror locally in
                        our environment as per instructions.</div>
                      <div>Now we need to install BioMart. In
                        Documentation, It is saying that it is not
                        recommended to install.</div>
                      <div><br>
                      </div>
                      <div>Could you please let us know the process of
                        linking public BioMart.to ensembl local server?</div>
                      <div><br>
                      </div>
                      <div>Thanks in advance</div>
                      <div>Rehaman</div>
                    </div>
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