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<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">Hi,</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial"><br></div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">I have a question about updating Ensembl Perl API. </div>

<div><br></div><div>I used this method

<span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">on e</span><span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;text-decoration-style:initial;text-decoration-color:initial;font-size:14px;background-color:rgb(255,255,255);float:none;display:inline">nsembl</span><span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:small;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline"> website</span>

 to 

<span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">update my</span> e<span style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">nsembl Perl API</span>
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<pre style="font-family:"Courier New",Courier,monospace;font-size:12.8px;margin:0px 0px 16px;line-height:16px;color:rgb(102,102,102);font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:left;text-indent:0px;text-transform:none;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">cd ~/src
wget <a href="https://github.com/Ensembl/ensembl-io/archive/release/92.zip">https://github.com/Ensembl/ensembl-io/archive/release/92.zip</a>
unzip 92.zip
mv ensembl-io-release-92 ensembl-io</pre><pre style="font-family:"Courier New",Courier,monospace;font-size:12.8px;margin:0px 0px 16px;line-height:16px;color:rgb(102,102,102);font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:left;text-indent:0px;text-transform:none;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">PERL5LIB=${PERL5LIB}:${HOME}/src/ensembl-io/modules</pre><pre style="margin:0px 0px 16px;line-height:16px;text-decoration-style:initial;text-decoration-color:initial"><pre style="background-color:rgb(255,255,255);color:rgb(102,102,102);font-family:"Courier New",Courier,monospace;font-size:12.8px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-transform:none;word-spacing:0px;margin:0px 0px 16px;line-height:16px;text-align:left;text-indent:0px;text-decoration-style:initial;text-decoration-color:initial">export PERL5LIB</pre><font face="arial, helvetica, sans-serif">However, I still couldn't load_registry_from_db (db_version 92)</font></pre><pre style="margin:0px 0px 16px;line-height:16px;text-decoration-style:initial;text-decoration-color:initial"><font style="background-color:rgb(255,255,255)">use Bio::EnsEMBL::Registry;<br></font></pre><pre style="margin:0px 0px 16px;line-height:16px;text-decoration-style:initial;text-decoration-color:initial"><font style="background-color:rgb(255,255,255)">$reg->load_registry_from_db (
    -host => '<a href="http://ensembldb.ensembl.org">ensembldb.ensembl.org</a>',
    -user => 'anonymous',
    -species => 'homo_sapiens',
    -db_version => 92,
    - verbose => '1',
);</font></pre>The warning message is <br>For <a href="mailto:homo_sapiens_core_92_38@ensembldb.ensembl.org">homo_sapiens_core_92_38@ensembldb.ensembl.org</a> there is a difference in the software release (91) and the database release (92). <br>You should update one of these to ensure that your script does not crash<pre style="margin:0px 0px 16px;line-height:16px;text-decoration-style:initial;text-decoration-color:initial"><br></pre></div><div>How can I update my Ensembl Perl API to load v92 dataset ?</div><div><br></div><div>Thanks</div><div><br></div>Best,<div><span style="font-size:14px">Tung-Han</span> .<br></div><div> 
<br clear="all"><div><div class="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>=============================<br></div>

<div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">Tung-Han Chang, research student</div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">Institute of biomedical informatics , National Yang-Ming University </div><div style="color:rgb(34,34,34);font-family:arial,sans-serif;font-size:14px;font-style:normal;font-variant-ligatures:normal;font-variant-caps:normal;font-weight:400;letter-spacing:normal;text-align:start;text-indent:0px;text-transform:none;white-space:normal;word-spacing:0px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial">No.155, Sec.2, Linong Street, Taipei, 112 Taiwan </div>

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