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<p>Hi Michael,</p>
<p>The ClinVar ReviewStatus isn't available in the cache, but can be
accessed using the Phenotypes plugin:</p>
<p><a class="moz-txt-link-freetext" href="https://github.com/Ensembl/VEP_plugins/blob/release/93/Phenotypes.pm">https://github.com/Ensembl/VEP_plugins/blob/release/93/Phenotypes.pm</a></p>
<p>This returns all attributes for all phenotypes with optional
filtering by data source. It is only available when using json
output format currently as each variant can return a large amount
of data which doesn't fit well in VCF. We could extend the
filtering and enable small numbers of attributes to be added to
VCF.<br>
</p>
Best wishes,<br>
<br>
Sarah<br>
<br>
<div class="moz-cite-prefix">On 11/08/2018 18:26, Michael Yourshaw
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CANcs_J+LgxvG6ftBEKaVP8-1YgbGVWbkhNUy4ejO=io5F7Q7YQ@mail.gmail.com">
<div dir="ltr">VEP provides the annotation CLIN_SIG : ClinVar
clinical significance of the dbSNP variant
<div><br>
</div>
<div>Is there a direct way to get the ClinVar ReviewStatus from
VEP?</div>
<div><br>
</div>
<div>If not, is ClinVar ReviewStatus available somewhere in the
VEP cache/database so that it could easily be retreived with a
VEP plugin?<br>
<div><br>
</div>
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<div>ॐ<br>
Michael Yourshaw<br>
<a href="mailto:myourshaw@ucla.edu" target="_blank"
moz-do-not-send="true">myourshaw@gmail.com</a><br>
<br>
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