<div dir="ltr"><div dir="ltr">Dear Sara,<div><br></div><div>You can also query the UniProt and get back a hit, taking your example, <a href="https://www.uniprot.org/uniprot/?query=ENST00000256078%20&sort=score&columns=id&format=tab">https://www.uniprot.org/uniprot/?query=ENST00000256078%20&sort=score&columns=id&format=tab</a> gives back  <span style="font-size:12.8px;background-color:rgb(255,255,255);text-decoration-style:initial;text-decoration-color:initial;float:none;display:inline">P01116.</span></div></div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr">Regards,<div><br>Ani<br><br><br>--------------------------"The Answer Lies In The Genome"--------------------------</div><div><br></div><div><span style="color:rgb(80,0,80);font-size:12.8px">[[[ To any NSA and FBI agents reading my email: please consider    ]]]</span><br style="color:rgb(80,0,80);font-size:12.8px"><span style="color:rgb(80,0,80);font-size:12.8px">[[[ whether defending the US Constitution against all enemies,     ]]]</span><br style="color:rgb(80,0,80);font-size:12.8px"><span style="color:rgb(80,0,80);font-size:12.8px">[[[ foreign or domestic, requires you to follow Snowden's example. ]]]</span><br style="color:rgb(80,0,80);font-size:12.8px"></div><div><span style="color:rgb(80,0,80);font-size:12.8px">-rms</span></div></div></div></div></div></div>
<br><div class="gmail_quote">On Mon, Sep 3, 2018 at 12:17 PM, Kieron Taylor <span dir="ltr"><<a href="mailto:ktaylor@ebi.ac.uk" target="_blank">ktaylor@ebi.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear Sara,<br>
<br>
Apologies that your request for help got overlooked for a few weeks.<br>
<br>
Start with this: <a href="http://rest.ensembl.org/xrefs/id/ENST00000256078?content-type=application/json&all_levels=1&external_db=Uniprot/SWISSPROT" rel="noreferrer" target="_blank">http://rest.ensembl.org/xrefs/<wbr>id/ENST00000256078?content-<wbr>type=application/json&all_<wbr>levels=1&external_db=Uniprot/<wbr>SWISSPROT</a><br>
<br>
If you do not use the external_db parameter, then you get all linked external IDs and can filter them yourself. Please note that the two IDs you were seeking are from Ensembl's perspective in two separate databases, Uniprot/SWISSPROT and Uniprot/SPTREMBL . Uniprot doesn't really use these terms any more, but it's not easy for us to change this part of our annotation import.<br>
<br>
Hope that helps you or somebody else with a similar question. Remember to respect our rate limiter [1]<br>
<br>
Regards,<br>
<br>
Kieron<br>
<br>
<br>
Kieron Taylor PhD.<br>
Ensembl Developer<br>
<br>
EMBL, European Bioinformatics Institute<br>
<br>
<br>
[1] <a href="https://github.com/Ensembl/ensembl-rest/wiki/Rate-Limits" rel="noreferrer" target="_blank">https://github.com/Ensembl/<wbr>ensembl-rest/wiki/Rate-Limits</a><br>
<div><div class="h5"><br>
<br>
> On 10 Aug 2018, at 15:50, Sara Arabyarmohammadi <<a href="mailto:sxa681@case.edu">sxa681@case.edu</a>> wrote:<br>
> <br>
> Hi,<br>
> I need to have a URL (a service location) to map Transcript Ids to corresponding Uniprot IDs programmatically using java.<br>
> <br>
> For example I want to input ENST00000256078 and receive back L7RSL8 and P01116.<br>
> <br>
> Can anybody help me find the Url to build the URL connection?<br>
> <br>
> Thanks,<br>
> Sara<br>
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</blockquote></div><br></div>