<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><font face="Menlo" style="font-size: 14px;" class="">Dear all,</font><div class=""><font face="Menlo" style="font-size: 14px;" class="">Thanks for your reply.</font></div><div class=""><font face="Menlo" style="font-size: 14px;" class=""><br class=""></font></div><div class=""><font face="Menlo" style="font-size: 14px;" class="">Can you please give me the URL for v.93?</font></div><div class=""><font face="Menlo" style="font-size: 14px;" class=""><br class=""></font></div><div class=""><font face="Menlo" style="font-size: 14px;" class="">It seems to me that '<a href="https://dec2017.rest.ensembl.org/overlap/region/homo_sapiens/6:2739490-2739490?feature=gene&logic_name=refseq_import&db_type=otherfeatures%27%20%20%20%20%20%20%20%20%20%20-H%20%27Content-type:application/json%27%20-H%20%20%20%20%20%20%20%20%20%20%27Accept:application/json" class="" moz-do-not-send="true">https://dec2017.rest.ensembl.org</a>’ is related with v.91</font></div><div class=""><font face="Menlo" style="font-size: 14px;" class=""><br class=""></font></div><div class=""><font face="Menlo" class=""><span style="font-size: 14px;" class="">Many thanks</span></font></div><div class=""><font face="Menlo" class=""><span style="font-size: 14px;" class="">Cinzia</span></font></div><div class=""><font face="Menlo" class=""><span style="font-size: 14px;" class=""><br class=""></span></font></div><div class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 16 Oct 2018, at 13:25, Brandon Walts <<a href="mailto:bwalts@ebi.ac.uk" class="">bwalts@ebi.ac.uk</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">
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<div text="#000000" bgcolor="#FFFFFF" class=""><p class="">Dear Cinzia</p><p class="">We have identified an issue with the external name cross
references in the release 94 otherfeatures database. We will
provide an update once we have a better idea of how this issue
should be resolved. In the meantime, we suggest you use the
release 93 (dec2017) database to get external names for RefSeq
import genes.</p><p class="">Best regards<br class="">
</p>
<div class="moz-cite-prefix">On 15/10/2018 14:08, Cinzia Malangone
wrote:<br class="">
</div>
<blockquote type="cite" cite="mid:FF064F95-222D-44BF-9D3F-3B1649BD71FF@ebi.ac.uk" class="">
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<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">Dear all,</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">I noticed that one of the
field that we need disappeared from the JSON response when we
try to query the feature endpoint for a gene.</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">Eg.</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class="">
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">curl -i '<a href="https://rest.ensembl.org/overlap/region/homo_sapiens/6:2739490-2739490?feature=gene&logic_name=refseq_import&db_type=otherfeatures%27%20%20%20%20%20%20%20%20%20%20%20%20%20%20-H%20%27Content-type:application/json%27%20-H%20%20%20%20%20%20%20%20%20%20%20%20%20%20%27Accept:application/json" class="" moz-do-not-send="true">https://rest.ensembl.org/overlap/region/homo_sapiens/6:2739490-2739490?feature=gene&logic_name=refseq_import&db_type=otherfeatures'
-H 'Content-type:application/json' -H
'Accept:application/json</a>'</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">[{"gene_id":"gene17080","feature_type":"gene","id":"gene17080","source":"BestRefSeq","end":2770330,"start":2663629,"strand":-1,"version":1,"description":"myosin
light chain kinase family
member4","assembly_name":"GRCh38","biotype":"protein_coding","seq_region_name":"6","logic_name":"refseq_import"}]</font></div>
</div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">versus</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">curl -i '<a href="https://dec2017.rest.ensembl.org/overlap/region/homo_sapiens/6:2739490-2739490?feature=gene&logic_name=refseq_import&db_type=otherfeatures%27%20%20%20%20%20%20%20%20%20%20-H%20%27Content-type:application/json%27%20-H%20%20%20%20%20%20%20%20%20%20%27Accept:application/json" class="" moz-do-not-send="true">https://dec2017.rest.ensembl.org/overlap/region/homo_sapiens/6:2739490-2739490?feature=gene&logic_name=refseq_import&db_type=otherfeatures'
-H 'Content-type:application/json' -H 'Accept:application/json</a>'</font>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman">[{"gene_id":"340156","source":"BestRefSeq","logic_name":"refseq_import","version":1,"feature_type":"gene","external_name":"MYLK4","description":null,"assembly_name":"GRCh38","biotype":"protein_coding","end":2770330,"seq_region_name":"6","strand":-1,"id":"340156","start":2663629}]</font></div>
<div class=""><font style="font-size: 14px;" class="" face="HelveticaNeueLTPro-Roman"><br class="">
</font></div>
<div class=""><br class="">
</div>
<div class=""><font class="" face="HelveticaNeueLTPro-Roman"><span style="font-size: 14px;" class="">I need to retrieve the
external_name, c</span></font><span style="font-size: 14px;
font-family: HelveticaNeueLTPro-Roman;" class="">an you
explain me why this field is not available anymore and
eventually how I can retrieve it?</span></div>
<div class=""><font class="" face="HelveticaNeueLTPro-Roman"><span style="font-size: 14px;" class=""><br class="">
</span></font></div>
<div class=""><font class="" face="HelveticaNeueLTPro-Roman"><span style="font-size: 14px;" class="">Many thanks</span></font></div>
<div class=""><font class="" face="HelveticaNeueLTPro-Roman"><span style="font-size: 14px;" class="">Cinzia</span></font></div>
<div class=""><font class="" face="HelveticaNeueLTPro-Roman"><span style="font-size: 14px;" class=""><br class="">
</span></font></div>
<br class="">
<fieldset class="mimeAttachmentHeader"></fieldset>
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