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<p>Dear David,</p>
<p>Thanks for the question. We currently don't have this
functionality however we can easily add the distance to the
closest exon.</p>
<p>To clarify, are you interested in getting the distance to the
nearest exon junction for the variants only when it affects a
protein coding transcript or also when they are
upstream/downstream of genes for example?</p>
<p>Best regards,</p>
<p>Irina</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 21/02/2019 11:09, David Tamborero
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAMk_RaRwvJszzH2CTWRs3SS0uvQ02m3m4vXN5vPpFHjnT05D0g@mail.gmail.com">
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<div>Dear all, <br>
</div>
<div><br>
</div>
<div>is any flag (which I cannot find) so the VEP output
includes the distance of the (coding) variant to the closest
exon junction?</div>
<div><br>
</div>
<div>If not, somebody has a recommended fancy approach to do so?
(My current approach is 'just' to match with my own script the
VEP output for a given transcript with the exon coordinates
data that can be retrieved in e.g. BioMart)</div>
<div><br>
</div>
<div>many thanks in advance!</div>
<div>d<br>
</div>
</div>
<br>
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</blockquote>
<pre class="moz-signature" cols="72">--
Irina Armean PhD, Bioinformatican
Ensembl Variation, EMBL-EBI, Hinxton, UK
iarmean[at]ebi.ac.uk | A3 - 135</pre>
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