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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif;color:#1F497D;mso-fareast-language:EN-US">Brilliant, thanks. I’ll dig through that and see how I get on.<o:p></o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif">From:</span></b><span lang="EN-US" style="font-size:11.0pt;font-family:"Calibri",sans-serif"> Dev <dev-bounces@ensembl.org>
<b>On Behalf Of </b>Emily Perry<br>
<b>Sent:</b> 21 March 2019 12:55<br>
<b>To:</b> Ensembl developers list <dev@ensembl.org><br>
<b>Subject:</b> Re: [ensembl-dev] Accessing transcript flags though the API<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi Simon<o:p></o:p></p>
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<p class="MsoNormal">TSL and APPRIS are both stored as attributes on the transcript. You can get them with get_all_Attributes:<o:p></o:p></p>
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<p class="MsoNormal"><a href="http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Transcript.html#a59f9ff2079a28ba80bc8b62a5e636327">http://www.ensembl.org/info/docs/Doxygen/core-api/classBio_1_1EnsEMBL_1_1Transcript.html#a59f9ff2079a28ba80bc8b62a5e636327</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">This will give you a list of hashes where you can extract the information.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">All the best<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Emily<o:p></o:p></p>
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<p class="MsoNormal">On 21 Mar 2019, at 11:46, Simon Andrews <<a href="mailto:simon.andrews@babraham.ac.uk">simon.andrews@babraham.ac.uk</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">I see that on the Ensembl website the transcript table has some really useful flags on it, things such as Transcript Support Level and APRIS category. I’d really like to add
these to the annotations I’m building. Is there an easy way to access these through the Perl API?<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"><br>
Thanks<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif">Simon.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri",sans-serif"> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:8.0pt;font-family:"Arial",sans-serif;color:#1F497D">The Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT<span class="apple-converted-space"> </span></span><i><span style="font-size:8.0pt;font-family:"Arial",sans-serif;color:#365F91">Registered
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif">_______________________________________________<br>
Dev mailing list </span><a href="mailto:Dev@ensembl.org"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#954F72">Dev@ensembl.org</span></a><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif"><br>
Posting guidelines and subscribe/unsubscribe info:<span class="apple-converted-space"> </span></span><a href="http://lists.ensembl.org/mailman/listinfo/dev"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#954F72">http://lists.ensembl.org/mailman/listinfo/dev</span></a><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif"><br>
Ensembl Blog:<span class="apple-converted-space"> </span></span><a href="http://www.ensembl.info/"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#954F72">http://www.ensembl.info/</span></a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:black">--<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:black">Dr Emily Perry (Pritchard) <br>
Ensembl Outreach Project Leader <br>
<br>
European Bioinformatics Institute (EMBL-EBI) <br>
European Molecular Biology Laboratory <br>
Wellcome Trust Genome Campus <br>
Hinxton <br>
Cambridge <br>
CB10 1SD <br>
UK<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="text-autospace:none"><o:p></o:p><o:p></o:p><span style="font-size:8.0pt;
font-family:"Arial","sans-serif";color:#1F497D">The Babraham Institute, Babraham Research Campus, Cambridge CB22 3AT
</span><i><span style="font-size:
8.0pt;font-family:"Arial","sans-serif";color:#365F91;mso-themecolor:accent1;
mso-themeshade:191">Registered Charity No. 1053902.</span></i><span style="font-size:8.0pt;font-family:"Arial","sans-serif";color:#1F497D"><o:p></o:p></span></p>
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and delete this email from your system. The contents of this e-mail are the views of the sender and do not necessarily represent the views of the Babraham Institute.
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