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<p>Hi Kurt,</p>
<p>Indeed it has now been fixed - it was done late yesterday and I
didn't get a chance to announce it. Sorry for any inconvnience
caused.<br>
<br>
The issue arose out teething problems with a new release process
and we hope to avoid a recurrance in the future.</p>
<p>Thanks for your patience.<br>
<br>
Best regards,<br>
Nick<br>
</p>
<div class="moz-cite-prefix">On 20/05/2019 19:06, Kurt Wheeler
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CAH--+maPis4MQexrgRhx11cDB=Zm5JKe72LfDuW9BFUf_yFiqw@mail.gmail.com">
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<div dir="ltr">If anyone else was affected by this bug it looks
like it's been fixed now.</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, May 15, 2019 at 10:40
AM Kurt Wheeler <<a href="mailto:kurt.wheeler91@gmail.com"
moz-do-not-send="true">kurt.wheeler91@gmail.com</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div dir="ltr">Hi Kieron,
<div><br>
</div>
<div>Is there any way we can be alerted when this issue is
corrected? Maybe an issue or bug report we can subscribe
to?</div>
<div><br>
</div>
<div>We have hardcoded version 43 into our code and this
will cause our code to break again when version 44 is
released. Once this issue is resolved we can go back to
using the response from the REST API to determine the
version so that our code handles the release of version 44
seamlessly.</div>
<div><br>
</div>
<div>Thanks,</div>
<div><br>
</div>
<div>- Kurt</div>
</div>
<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Wed, May 15, 2019 at
5:23 AM Kieron Taylor <<a
href="mailto:ktaylor@ebi.ac.uk" target="_blank"
moz-do-not-send="true">ktaylor@ebi.ac.uk</a>> wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid
rgb(204,204,204);padding-left:1ex">Hi Kurt,<br>
<br>
It looks like a post-release hot fix has brought in some
extra metadata that was intended for the future. There is
no impact on the biological data, only the reported
version is incorrect. The webteam is aware and will sort
it out as soon as possible.<br>
<br>
Thank you for bringing up the issue, regards,<br>
<br>
Kieron<br>
<br>
<br>
Kieron Taylor PhD.<br>
Ensembl Developer<br>
<br>
EMBL, European Bioinformatics Institute<br>
<br>
<br>
<br>
<br>
<br>
<br>
> On 14 May 2019, at 17:36, Kurt Wheeler <<a
href="mailto:kurt.wheeler91@gmail.com" target="_blank"
moz-do-not-send="true">kurt.wheeler91@gmail.com</a>>
wrote:<br>
> <br>
> Hey are these still the latest versions? <a
href="https://rest.ensembl.org/documentation/info/eg_version"
rel="noreferrer" target="_blank" moz-do-not-send="true">https://rest.ensembl.org/documentation/info/eg_version</a>
is returning:<br>
> <br>
> {<br>
> "<br>
> version": 44<br>
> }<br>
> <br>
> Which seems to be breaking some code because this
leads us to try to pull files from URLs such as <a
href="ftp://ftp.ensemblgenomes.org/pub/metazoa/release-44/fasta/anopheles_gambiae/dna/"
rel="noreferrer" target="_blank" moz-do-not-send="true">ftp://ftp.ensemblgenomes.org/pub/metazoa/release-44/fasta/anopheles_gambiae/dna/</a>
instead of <a
href="ftp://ftp.ensemblgenomes.org/pub/metazoa/release-43/fasta/anopheles_gambiae/dna/"
rel="noreferrer" target="_blank" moz-do-not-send="true">ftp://ftp.ensemblgenomes.org/pub/metazoa/release-43/fasta/anopheles_gambiae/dna/</a>.<br>
> <br>
> Thanks!<br>
> <br>
> On Tue, Apr 9, 2019 at 8:01 AM Astrid Gall <<a
href="mailto:agall@ebi.ac.uk" target="_blank"
moz-do-not-send="true">agall@ebi.ac.uk</a>> wrote:<br>
> Dear all<br>
> <br>
> We are pleased to announce that the latest Ensembl
and Ensembl Genomes updates have been released:<br>
> <a href="http://www.ensembl.org/" rel="noreferrer"
target="_blank" moz-do-not-send="true">http://www.ensembl.org/</a><br>
> <a href="http://ensemblgenomes.org" rel="noreferrer"
target="_blank" moz-do-not-send="true">http://ensemblgenomes.org</a><br>
> <br>
> <br>
> Highlights of this release include:<br>
> • First-pass full annotation of the mouse
genome (GENCODE M21 gene set)<br>
> • Release of Ensembl-RefSeq MANE Select v0.5
transcripts<br>
> • Update to GENCODE 30 for human<br>
> • Joint REST server for Ensembl and Ensembl
Genomes<br>
> • Changes to FTP directory layout<br>
> • New genomes: 19 birds, five reptiles and 12
mammals<br>
> • New interface for configuration of regulation
tracks<br>
> <br>
> <br>
> The release blog post with all news can be viewed
here:<br>
> <a
href="http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/"
rel="noreferrer" target="_blank" moz-do-not-send="true">http://www.ensembl.info/2019/04/09/ensembl-96-and-ensembl-genomes-43-are-out/</a><br>
> <br>
> For the latest news from the Ensembl project visit
our blog at:<br>
> <a href="http://www.ensembl.info" rel="noreferrer"
target="_blank" moz-do-not-send="true">http://www.ensembl.info</a><br>
> <br>
> The release webinar is planned for Wednesday 17th
April 2019 at 16:00 BST. Please register using the
following URL:<br>
> <a
href="https://attendee.gototraining.com/r/8260823671959775489"
rel="noreferrer" target="_blank" moz-do-not-send="true">https://attendee.gototraining.com/r/8260823671959775489</a><br>
> Registration is free.<br>
> <br>
> Best regards,<br>
> <br>
> Astrid<br>
> On behalf of the Ensembl team<br>
> --<br>
> Dr Astrid Gall<br>
> Ensembl Outreach Officer<br>
> European Molecular Biology Laboratory - European
Bioinformatics Institute (EMBL-EBI)<br>
> Wellcome Genome Campus<br>
> Hinxton, Cambridge<br>
> CB10 1SD<br>
> United Kingdom<br>
> <br>
> <br>
> <br>
> <br>
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</blockquote>
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<pre class="moz-quote-pre" wrap="">_______________________________________________
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