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Dear Greg,<br>
<br>
Thank you for letting us now, we will change it to avoid this
problem in the future.<br>
<br>
That link on the website is pointing to the old filename that was
changed once we started to work with other divisions (plants, etc.).
It was renamed to <i>species_tree.vertebrates.branch_len.nw</i> and
the previous file left as a symlink for backward compatibility. You
can find the species tree here: <a moz-do-not-send="true"
href="https://github.com/Ensembl/ensembl-compara/blob/4adfcbfadfc92eb2ee047cb455582dd78f36da27/scripts/pipeline/species_tree.vertebrates.branch_len.nw">https://github.com/Ensembl/ensembl-compara/blob/4adfcbfadfc92eb2ee047cb455582dd78f36da27/scripts/pipeline/species_tree.vertebrates.branch_len.nw</a><br>
<br>
Kind regards,<br>
Jorge<br>
<br>
<div class="moz-cite-prefix">On 11/11/2019 16:56, Greg Slodkowicz
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:20191111170132.28A3862CED6_DC993ECB@hh-mx3.ebi.ac.uk">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<span class="" style="font-family: Arial, Helvetica, sans-serif;
font-size: small; font-variant-ligatures: normal; orphans: 2;
widows: 2; background-color: rgb(255, 255, 255);">Dear
developers,</span>
<div class="" style="font-family: Arial, Helvetica, sans-serif;
font-size: small; font-variant-ligatures: normal; orphans: 2;
widows: 2; background-color: rgb(255, 255, 255);">I just noticed
that the link to the species tree here <a
href="https://www.ensembl.org/info/about/speciestree.html"
target="_blank"
data-saferedirecturl="https://www.google.com/url?q=https://www.ensembl.org/info/about/speciestree.html&source=gmail&ust=1573576866489000&usg=AFQjCNHIR-vl3OQa87rRqwYLx8ORtqp6dg"
class="" style="color: rgb(17, 85, 204);"
moz-do-not-send="true">https://www.ensembl.org/<wbr class="">info/about/speciestree.html</a> <wbr
class="">points to <a
href="https://github.com/Ensembl/ensembl-compara/blob/4adfcbfadfc92eb2ee047cb455582dd78f36da27/scripts/pipeline/species_tree.ensembl.branch_len.nw"
target="_blank"
data-saferedirecturl="https://www.google.com/url?q=https://github.com/Ensembl/ensembl-compara/blob/4adfcbfadfc92eb2ee047cb455582dd78f36da27/scripts/pipeline/species_tree.ensembl.branch_len.nw&source=gmail&ust=1573576866489000&usg=AFQjCNFS4KHX-n8JaozDd5eUra8kJJeN_Q"
class="" style="color: rgb(17, 85, 204);"
moz-do-not-send="true">https://github.com/Ensembl/<wbr
class="">ensembl-compara/blob/<wbr class="">4adfcbfadfc92eb2ee047cb455582d<wbr
class="">d78f36da27/scripts/pipeline/<wbr class="">species_tree.ensembl.branch_<wbr
class="">len.nw</a> which appears to be just a symlink. I
couldn't find the actual tree in the repository but perhaps it’s
there somewhere?<br class="">
</div>
<div class="" style="font-family: Arial, Helvetica, sans-serif;
font-size: small; font-variant-ligatures: normal; orphans: 2;
widows: 2; background-color: rgb(255, 255, 255);"><br class="">
</div>
<div class="" style="font-family: Arial, Helvetica, sans-serif;
font-size: small; font-variant-ligatures: normal; orphans: 2;
widows: 2; background-color: rgb(255, 255, 255);">Best,</div>
<div class="" style="font-family: Arial, Helvetica, sans-serif;
font-size: small; font-variant-ligatures: normal; orphans: 2;
widows: 2; background-color: rgb(255, 255, 255);">Greg</div>
<div class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode:
space; line-break: after-white-space;" class="">
<div style="color: rgb(0, 0, 0); font-family: Helvetica;
font-size: 12px; font-style: normal; font-variant-caps:
normal; font-weight: normal; letter-spacing: normal;
text-align: start; text-indent: 0px; text-transform: none;
white-space: normal; word-spacing: 0px;
-webkit-text-stroke-width: 0px;">-- <br class="">
Dr Greg Slodkowicz<br class="">
Structural Studies (Babu Group)<br class="">
MRC Laboratory of Molecular Biology<br class="">
Francis Crick Avenue,<br class="">
Cambridge, CB2 0QH, UK</div>
</div>
</div>
<br class="">
<br>
<fieldset class="mimeAttachmentHeader"></fieldset>
<pre class="moz-quote-pre" wrap="">_______________________________________________
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</pre>
</blockquote>
<br>
<pre class="moz-signature" cols="72">--
Jorge Alvarez Jarreta, Ph.D.
Bioinformatician @Ensembl Compara
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus, Hinxton
Cambridge, CB10 1SD, United Kingdom
Room: A3-145
Phone: + 44 (0)1223 494 237
E-mail: <a class="moz-txt-link-abbreviated" href="mailto:jalvarez@ebi.ac.uk">jalvarez@ebi.ac.uk</a></pre>
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