<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Dear developers,</div><div class="">I was wondering if there is a way to access the species tree that is used for running TreeBEST? I have the ’normal’ Newick species tree from the Compara GitHub repository but it seems like TreeBEST is quite picky about the labelling of the tree nodes. </div><div class=""><br class=""></div><div class="">What I would like to do is re-run gene-species tree reconciliation for a few gene trees of interest, get bootstrap replicates for that tree and then run some downstream analysis on them to get a measure of uncertainty introduced by the differences in the tree.I would ideally like the species tree from an archival (release 78) version of Ensembl (though I imagine it hasn’t changed that much).</div><div class=""><br class=""></div><div class="">Many thanks,</div><div class="">Greg <br class=""><div class="">
<div dir="auto" style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px;">-- <br class="">Dr Greg Slodkowicz<br class="">Structural Studies (Babu Group)<br class="">MRC Laboratory of Molecular Biology<br class="">Francis Crick Avenue,<br class="">Cambridge, CB2 0QH, UK</div></div>
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