<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Souhila,<div class=""><br class=""></div><div class="">Thanks for this report. This is a bug in the FunMotifs plugin caused when using a more recent perl version.</div><div class=""><br class=""></div><div class="">We’ve implemented a fix for release/100. You can access the plugin early from here: <a href="https://github.com/Ensembl/VEP_plugins/blob/release/100/FunMotifs.pm" class="">https://github.com/Ensembl/VEP_plugins/blob/release/100/FunMotifs.pm</a></div><div class=""><br class=""></div><div class="">Kind Regards,</div><div class="">Andrew</div><div class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 6 Apr 2020, at 18:40, Souhila Amanzougarene <<a href="mailto:souhila.amanzougarene@cnrs.fr" class="">souhila.amanzougarene@cnrs.fr</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div class="">Hello,<br class=""><br class="">I'm Souhila AMANZOUGARENE, a bioinformatician in the UMR 8199 from CNRS (France).<br class="">I'm using VEP to annotate SNPs in human data and I use many plugins to do this. I have tried FunMotifs plugin, but it doesn't seem to work.<br class=""><br class="">Here is the error warning:<br class=""><br class="">WARNING: Failed to compile plugin FunMotifs: Experimental shift on scalar is now forbidden at /media/Data/Ensembl_hg19/EnsemblVepCache/Plugins/FunMotifs.pm line 106, near "$params if"<br class=""><br class="">Compilation failed in require at (eval 79) line 2.<br class=""><br class="">BEGIN failed--compilation aborted at (eval 79) line 2.<br class=""><br class="">I have modified the line 106 code:<br class=""><br class="">shift $params if ($params->[0] =~ /.gz/i); #Removes filename<br class=""><br class="">by:<br class=""><br class="">shift @{$params} if ($params->[0] =~ /.gz/i); #Removes filename<br class=""><br class="">After this change, I do not get a warning but it doesn't annotate with the file funmotifs_sorted.bed.gz, and I have blank column for all SNPs.<br class=""><br class="">Could you help me please to find a solution to this problem?<br class=""><br class=""><br class="">Best regards<br class=""><br class="">-- <br class="">Souhila Amanzougarene<br class=""><br class="">Bio-Informaticienne<br class=""><br class="">UMR CNRS 1283<br class="">(Epi)génomique Fonctionnelle et Physiologie Moléculaire Du Diabète et Maladies Associées<br class=""><br class="">FR3508 European Genomic Institute for Diabetes (E.G.I.D.)<br class="">Faculté de médecine - Pôle Recherche<br class=""><br class="">sous sol, Aile Ouest<br class="">1 place de Verdun<br class="">59045 LILLE CEDEX<br class="">FRANCE<br class=""><a href="mailto:souhila.amanzougarene@cnrs.fr" class="">souhila.amanzougarene@cnrs.fr</a><br class="">03 74 00 81 05<br class=""><br class="">http://www.good.cnrs.fr/ - http://www.egid.fr/<br class=""><br class=""><br class="">_______________________________________________<br class="">Dev mailing list Dev@ensembl.org<br class="">Posting guidelines and subscribe/unsubscribe info: https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org<br class="">Ensembl Blog: http://www.ensembl.info/<br class=""></div></div></blockquote></div><br class=""></div></body></html>