<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Huaiyuan<div class=""><br class=""></div><div class="">Are you using the online VEP on our website, or the downloaded version?</div><div class=""><br class=""></div><div class="">Cheers</div><div class=""><br class=""></div><div class="">Anne</div><div class=""><br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 26 Oct 2020, at 06:24, 孙怀远 <<a href="mailto:sunhy@mail.cbi.pku.edu.cn" class="">sunhy@mail.cbi.pku.edu.cn</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><p class="">
Hi,
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I'm a PhD candidate from Ge Gao's group. When using VEP, I found SNPs predicted to be missense variants, but the ORF was annotated incorrectly. For example, the ORF of a SNP on chr15:89582890 is 89582890-89582892 in gencode.v34, but annotated to be 89582890-89582888 in reverse strand. Please help me correct these annotations. The VEP version I used is v100.3.
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Thank you!
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Huaiyuan Sun
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<span style="outline:0px;font-family:"Comic Sans MS";" class="">Huaiyuan Sun <span style="outline:0px;line-height:25px;background-color:#F7F7F7;" class="">Ph.D. candidate</span></span>
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<span style="outline:0px;line-height:1.7;font-family:"Comic Sans MS";" class="">Peking-Tsinghua Center for Life Sciences </span>
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<span style="outline:0px;line-height:1.7;font-family:"Comic Sans MS";" class="">Peking University, Beijing 100871, China</span>
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<span style="outline:0px;line-height:1.7;font-family:"Comic Sans MS";" class="">Tel: 18810504686</span>
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