<html><head><meta http-equiv="content-type" content="text/html; charset=utf-8"></head><body dir="auto">Hi Mike,<br><br><div dir="ltr">You can access web VEP at the following link: <a href="https://www.ensembl.org/Homo_sapiens/Tools/VEP">https://www.ensembl.org/Homo_sapiens/Tools/VEP</a>. Web VEP allows you to submit up a file of up to 50MB for processing. </div><div dir="ltr"><br></div><div dir="ltr">The virtual machine contains the command line version of VEP, which can be used to analyse larger files and provide additional annotations. You can find documentation for command line VEP here: <a href="https://m.ensembl.org/info/docs/tools/vep/script/index.html">https://www.ensembl.org/info/docs/tools/vep/script/index.html</a></div><div dir="ltr"><br></div><div dir="ltr">Alternatively, you can access VEP through our REST server here: <a href="https://rest.ensembl.org/">https://rest.ensembl.org/</a></div><div dir="ltr"><br></div><div dir="ltr">Kind Regards,</div><div dir="ltr">Andrew</div><div dir="ltr"><br></div><div dir="ltr"><br></div><div dir="ltr"><br><blockquote type="cite">On 22 Jan 2021, at 18:24, Rightmire, Michael Paul <m.rightmire@dkfz-heidelberg.de> wrote:<br><br></blockquote></div><blockquote type="cite"><div dir="ltr">
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<p style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px;">Good Morning, <br>
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<p style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px;">VEP annotations can be obtained directly from the Ensemble website (VEP Web interface I.e. https://www.ensembl.org/info/docs/tools/vep/online/index.html)<br>
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Is this tool available inside the downloadable Virtual Machine (Ensembl101.ova?) If so, is there documentation/tutorials?<br>
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<p style="font-family: Calibri, Arial, Helvetica, sans-serif; font-size: 16px;">Many thanks!<br>
Mike<br>
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<p class="western" style="margin-bottom:0in; line-height:100%"><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt"><span lang="en-US"><b>Michael Rightmire</b></span></font></font></font></p>
<p class="western" style="margin-bottom:0in; line-height:100%"><font color="#7f7f7f"><font face="Arial, serif"><font size="2" style="font-size:10pt"><span lang="en-US">Bioinformatics and Omics Data Analytics (B240)</span></font></font></font></p>
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<p class="western" style="margin-bottom:0in; line-height:100%"><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt"><span lang="en-US">German Cancer Research Center (DKFZ)</span></font></font></font></p>
<p class="western" style="margin-bottom:0in; line-height:100%"><span style="font-size:10pt; font-family:Arial,serif; color:rgb(128,128,128)">Im Neuenheimer Feld 280</span></p>
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<p class="western" style="margin-bottom:0in; line-height:100%"><span style="color:rgb(128,128,128); font-family:Arial,serif; font-size:13.3333px">phone: </span><font color="#808080"><font face="Arial, serif"><font size="2" style="font-size:10pt">+49 176 7131
8758</font></font></font></p>
<p class="western" style="margin-bottom:0in; line-height:100%"><font color="#808080" style="font-size:11pt"><font face="Arial, serif"><font style="font-size:10pt">fax: +49 6221 42-</font></font></font><span style="font-size:11pt"><font color="#808080"><font face="Arial, serif"><font style="font-size:10pt">3563</font></font></font></span></p>
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<p class="western" style="margin-bottom:0in; line-height:100%"><a tabindex="0" href="mailto:m.mustermann@dkfz.de" id="NoLP"><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt">M.Rightmire</font></font></font><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt">@dkfz</font></font></font><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt">-heidelberg</font></font></font><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt">.de</font></font></font></a><font color="#0047b9"><font face="Arial, serif"><font size="2" style="font-size:10pt">
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