<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Michael,<div class=""><br class=""></div><div class="">Thank you for getting in touch. Docker 103.1 should be available now, you can update with `docker pull ensemblorg/ensembl-vep`.</div><div class=""><br class=""></div><div class="">Additionally, the CHECKSUMS issue should also now be resolved. Please let me know if you have any issues when rerunning and I can take a closer look.</div><div class=""><br class=""></div><div class="">Kind Regards,</div><div class="">Andrew<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 18 Feb 2021, at 19:07, Michael Yourshaw <<a href="mailto:myourshaw@gmail.com" class="">myourshaw@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">I get the following message running<div class="">docker run -t -i \<br class="">-v /mnt/hdd/dnanexus/docker/vep_mounted_volumes/GRCh38/vep_data:/opt/vep/.vep \<br class="">ensemblorg/ensembl-vep \<br class="">perl INSTALL.pl -a cfp -s homo_sapiens_merged -y GRCh38 -g all \<br class="">;<br class=""><div class=""><div dir="ltr" class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr" class=""><div class=""><br class=""></div><div class="">Version check reports there are post-release updates available of ensembl-vep (installed: 103.0, available: 103.1)<br class=""><br class="">You should exit this installer and re-download 'ensembl-vep' if you wish to update<br class=""><br class="">Do you wish to exit so you can get updates (y) or continue (n): n<br class=""></div><div class=""><br class=""></div><div class="">How would I get 103.1 via docker?</div><div class=""><br class=""></div><div class="">Having accepted version 103, after the genome fastq downloads, the INSTALL process fails with</div><div class=""><br class=""></div><div class="">#- getting list of available cache files<br class="">NB: Remember to use --merged when running the VEP with this cache!<br class=""> - downloading <a href="ftp://ftp.ensembl.org/pub/release-103/variation/indexed_vep_cache/homo_sapiens_merged_vep_103_GRCh38.tar.gz" class="">ftp://ftp.ensembl.org/pub/release-103/variation/indexed_vep_cache/homo_sapiens_merged_vep_103_GRCh38.tar.gz</a><br class="">Cannot open Local file /opt/vep/.vep/tmp/CHECKSUMS: No such file or directory<br class=""> at INSTALL.pl line 1244.<br class="">curl failed (150), trying to fetch using LWP::Simple<br class="">LWP::Simple failed (404), trying to fetch using HTTP::Tiny<br class="">Use of uninitialized value in numeric eq (==) at /usr/share/perl/5.26/HTTP/Tiny.pm line 606.<br class="">Use of uninitialized value in numeric eq (==) at /usr/share/perl/5.26/HTTP/Tiny.pm line 606.<br class="">ERROR: Failed last resort of using HTTP::Tiny to download <a href="ftp://ftp.ensembl.org/pub/release-103/variation/indexed_vep_cache/CHECKSUMS" class="">ftp://ftp.ensembl.org:21/pub/release-103/variation/indexed_vep_cache/CHECKSUMS</a><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">ॐ<br class="">Michael Yourshaw<br class=""><a href="mailto:myourshaw@ucla.edu" target="_blank" class="">myourshaw@gmail.com</a><br class=""><br class="">This message is intended only for the use of the addressee and may contain information that is PRIVILEGED and CONFIDENTIAL, and/or may contain ATTORNEY WORK PRODUCT. If you are not the intended recipient, you are hereby notified that any dissemination of this communication is strictly prohibited. If you have received this communication in error, please erase all copies of the message and its attachments and notify us immediately. Thank you.</div></div></div></div></div></div>
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