<html><head><meta http-equiv="Content-Type" content="text/html; charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class="">Hi Bogdan,<div class=""><br class=""></div><div class="">Ensembl displays RNA secondary structures through the ’Secondary Structure’ page within the gene tab for your gene of interest. E.g:</div><div class=""><a href="http://www.ensembl.org/Homo_sapiens/Gene/SecondaryStructure?db=core;g=ENSG00000277995;r=CHR_HSCHR5_2_CTG1:29079384-29079498;t=ENST00000611262" class="">http://www.ensembl.org/Homo_sapiens/Gene/SecondaryStructure?db=core;g=ENSG00000277995;r=CHR_HSCHR5_2_CTG1:29079384-29079498;t=ENST00000611262</a></div><div class=""><br class=""></div><div class=""><span style="caret-color: rgb(102, 102, 102); font-family: "Luxi Sans", Helvetica, Arial, Geneva, sans-serif;" class="">The displayed structural information comes primarily from the covariance models provided by RFAM and used for each ncRNA gene family in Ensembl. </span><span style="caret-color: rgb(102, 102, 102); font-family: "Luxi Sans", Helvetica, Arial, Geneva, sans-serif;" class="">If the genes could not be found in the RFAM database, we use RNAFold to predict their structure. </span><span style="caret-color: rgb(102, 102, 102); font-family: "Luxi Sans", Helvetica, Arial, Geneva, sans-serif;" class="">The 2D plots are generated using the r2r package.</span></div><div class=""><br class=""></div><div class="">Best wishes</div><div class=""><br class=""></div><div class="">Ben<br class=""><div><br class=""><blockquote type="cite" class=""><div class="">On 23 Feb 2021, at 21:57, Bogdan Tanasa <<a href="mailto:tanasa@gmail.com" class="">tanasa@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" class="">Dear all, <div class=""><br class=""></div><div class="">please would you let me know, is there any track available for predicted RNA SECONDARY STRUCTURES for human or mouse genomes ?</div><div class=""><br class=""></div><div class="">thanks a lot, </div><div class=""><br class=""></div><div class="">bogdan</div></div>
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<div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div style="color: rgb(0, 0, 0); letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px; -webkit-text-stroke-width: 0px; word-wrap: break-word; -webkit-nbsp-mode: space; line-break: after-white-space;" class=""><div class="">Dr. Ben Moore (he/him)</div><div class="">Ensembl Outreach Manager</div><div class=""><br class=""></div><div class="">European Bioinformatics Institute (EMBL-EBI)</div><div class="">European Molecular Biology Laboratory</div><div class="">Wellcome Trust Genome Campus</div><div class="">Hinxton</div><div class="">Cambridge</div><div class="">CB10 1SD</div><div class="">UK</div><div class=""><br class=""></div><div class=""><a href="mailto:bmoore@ebi.ac.uk" class="">bmoore@ebi.ac.uk</a></div><div class="">+44 (0)1223 494265</div></div></div></div>
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