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<p>Bash on Linux version 7 with Perl/5.24.0. Attempting to access 1000 Genomes population frequencies using example script from
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<p><br>
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<p><a href="https://www.ensembl.info/2015/06/18/1000-genomes-phase-3-frequencies-genotypes-and-ld-data/">https://www.ensembl.info/2015/06/18/1000-genomes-phase-3-frequencies-genotypes-and-ld-data/</a></p>
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<p>The API version used is 104.</p>
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<p>Error message is </p>
<p>'Bio::EnsEMBL::Variation::DBSQL::VCFCollectionAdaptor' cannot be found.<br>
</p>
<p><br>
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<p>Exception is </p>
<p>'Can't locate Bio/DB/HTS/Tabix.pm in @INC' </p>
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<p>BEGIN failed--compilation aborted at /src/ensembl-io/modules/Bio/EnsEMBL/IO/TabixParser.pm line 41.</p>
<p>BEGIN failed--compilation aborted at /src/ensembl-io/modules/Bio/EnsEMBL/IO/Parser/VCF4Tabix.pm line 42.</p>
<p>Compilation failed in require at /src/ensembl-variation/modules/Bio/EnsEMBL/Variation/VCFCollection.pm line 82.<br>
BEGIN failed--compilation aborted at /src/ensembl-variation/modules/Bio/EnsEMBL/Variation/VCFCollection.pm line 82.<br>
Compilation failed in require at /src/ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/VCFCollectionAdaptor.pm line 98.<br>
BEGIN failed--compilation aborted at /src/ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/VCFCollectionAdaptor.pm line 98.<br>
Compilation failed in require at (eval 875) line 2.<br>
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<p>I have been unable to clone tabix from github, but their page says it has been moved to htslib. I made htslib following api installation instructions here:<br>
</p>
<p><a href="https://useast.ensembl.org/info/docs/api/api_installation.html">https://useast.ensembl.org/info/docs/api/api_installation.html</a></p>
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<p>Thanks,</p>
<p>Calum<br>
</p>
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