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<p>Hi Michael,</p>
<p>We have added a fix to JSON output which will be available in the
next Ensembl release.</p>
<p><br>
</p>
<p>Best wishes,</p>
<p>Diana <br>
</p>
<p><br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 26/10/2021 15:12, Diana Lemos wrote:<br>
</div>
<blockquote type="cite"
cite="mid:20211026141511.8899611AD04_1780D6FB@hh-mx4.ebi.ac.uk">
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<p>Hi Michael,</p>
<p>Thank you for reporting this issue. <br>
</p>
<p>The JSON output does not include used_ref and given_ref if the
ref is "-" which is the case for your example. We are working on
a fix. <br>
</p>
<p><br>
</p>
<p>Best wishes,</p>
<p>Diana <br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 22/10/2021 22:30, Michael Yourshaw
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:20211022213236.3DCD162CEF1_1732DF4B@hh-mx3.ebi.ac.uk">
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<div dir="ltr">When I updated to the latest VEP I encountered a
handful of transcripts in the json output that did not contain
a <span style="color:rgb(6,125,23);font-family:"JetBrains
Mono",monospace;font-size:9.8pt">used_ref </span>field.
This seems to be a problem introduced recently and does not
affect the great majority of variants.
<div><br>
</div>
<div>An example record:</div>
<div><br>
</div>
<div>is attached.<br>
<div><br>
</div>
<div><br clear="all">
<div>
<div dir="ltr" class="gmail_signature"
data-smartmail="gmail_signature">
<div dir="ltr">
<div>ॐ<br>
Michael Yourshaw<br>
<a href="mailto:myourshaw@ucla.edu"
target="_blank" moz-do-not-send="true">myourshaw@gmail.com</a><br>
<br>
This message is intended only for the use of the
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