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<p class="MsoNormal">Hell Marc,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Yes, the protein domain issues for both human and mouse have been resolved. Thank you and any additional team members involved for the rapid response and fix.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Cheers!<o:p></o:p></p>
<p class="MsoNormal">Eric<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><b>From:</b> Dev <dev-bounces@ensembl.org> <b>On Behalf Of </b>
mchakiachvili<br>
<b>Sent:</b> Friday, January 21, 2022 7:27 AM<br>
<b>To:</b> Ensembl developers list <dev@ensembl.org><br>
<b>Subject:</b> <External> Re: [ensembl-dev] release 105 MySQL protein domain data severely truncated<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><b><br>
<span style="color:red">EXTERNAL MESSAGE</span></b><o:p></o:p></p>
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<p class="MsoNormal">Hello again, <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">files for both homo_sapiens and mus_musculus have been regenerated anew today, and published onto the FTP.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Please can you confirm that this resolve your issue? <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Thanks for your support. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Marc. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, 2022-01-20 at 17:14 +0000, mchakiachvili wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hello Eric,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Thanks for your message, we are aware of some troubles with truncated files for some of our current FTP.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">We are correcting those when they arise. We'll surely fix those dumps quickly and let you know when the expected files are restored. <o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Sorry for the inconvenience caused.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Marc<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">On Thu, 2022-01-20 at 16:24 +0000, Eric Engelhard wrote:<o:p></o:p></p>
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<p class="MsoNormal">Hello Ensembl team,<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I am working from Ensembl MySQL downloads and have discovered that protein domain data from
<a href="https://urldefense.com/v3/__ftp:/ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_105_38/__;!!ODpDvJZr5w!Sldr6zpX7noerjYVZDfvSGgeSqBmqJqTExtB7QP3DuKZSrjPYARUQNsaxF6aTI8Bg33M$">
ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_core_105_38/</a> <o:p></o:p></p>
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<p class="MsoNormal">and <a href="https://urldefense.com/v3/__ftp:/ftp.ensembl.org/pub/current_mysql/mus_musculus_core_105_39/__;!!ODpDvJZr5w!Sldr6zpX7noerjYVZDfvSGgeSqBmqJqTExtB7QP3DuKZSrjPYARUQNsaxF6aTCDyF8wY$">
ftp://ftp.ensembl.org/pub/current_mysql/mus_musculus_core_105_39/</a> is severely truncated. This is directly impacting the Core Perl API, which is only able to extract
<o:p></o:p></p>
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<p class="MsoNormal">domain information for about 20 proteins. Specifically, the interpro.txt.gz files for each data set are empty files. I am still comparing other files against release 104 for size<o:p></o:p></p>
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<p class="MsoNormal">anomalies.<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Is this a know issue?<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Thanks,<o:p></o:p></p>
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<p class="MsoNormal">Eric<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">********************************************************************
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<o:p></o:p></p>
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<p class="MsoNormal">********************************************************************<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">_______________________________________________<o:p></o:p></p>
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<div>
<p class="MsoNormal">Dev mailing list <a href="mailto:Dev@ensembl.org">Dev@ensembl.org</a><o:p></o:p></p>
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https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><o:p></o:p></p>
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<p class="MsoNormal">Ensembl Blog: <a href="https://urldefense.com/v3/__http:/www.ensembl.info/__;!!ODpDvJZr5w!Sldr6zpX7noerjYVZDfvSGgeSqBmqJqTExtB7QP3DuKZSrjPYARUQNsaxF6aTLowhttO$">
http://www.ensembl.info/</a><o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<pre>-- <o:p></o:p></pre>
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<p class="MsoNormal">Marc Chakiachvili<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Ensembl Production Project Leader - Genomics Technology Infrastructure<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">European Bioinformatics Institute (EMBL-EBI)<o:p></o:p></p>
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<p class="MsoNormal">European Molecular Biology Laboratory<o:p></o:p></p>
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<p class="MsoNormal">Wellcome Trust Genome Campus<o:p></o:p></p>
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<p class="MsoNormal">Hinxton<o:p></o:p></p>
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<p class="MsoNormal">Cambridge CB10 1SD<o:p></o:p></p>
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<p class="MsoNormal">United Kingdom<o:p></o:p></p>
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