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<p>Hi Michael,</p>
<p>On the Web VEP there is an option to identify the canonical
transcripts, under "Additional annotations" you just need to tick
the option "Identify canonical transcripts". <br>
</p>
<p>Let me know if you have further questions.</p>
<p><br>
</p>
<p>Best wishes,</p>
<p>Diana <br>
</p>
<p><br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 02/07/2022 06:01, Michael Yourshaw
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:20220702050359.44C4F119E30_2BFD1BFB@hh-mx4.ebi.ac.uk">
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<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif">When
I run VEP the json results include a canonical value of
“1” identifying the canonical transcript.</p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"> </p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif">The
web VEP does not have a column for the canonical
transcript.</p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"> </p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif">Nor
does the transcripts table for a gene identify the
canonical transcript.</p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"> </p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif">Is
there a way on the web site to identify the canonical
transcript of a gene?</p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"> </p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"><span
style="color:rgb(33,33,33)">Thanks,</span></p>
<p class="MsoNormal"
style="margin:0in;font-size:11pt;font-family:Calibri,sans-serif"><span
style="color:rgb(33,33,33)"><br>
</span></p>
<div>
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data-smartmail="gmail_signature">
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<div>ॐ<br>
Michael Yourshaw<br>
<a href="mailto:myourshaw@ucla.edu" target="_blank"
moz-do-not-send="true">myourshaw@gmail.com</a><br>
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<br>
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