<div dir="ltr"><div class="gmail_default" style="font-family:trebuchet ms,sans-serif;font-size:small">That would be perfect. :) thanks so much!<br></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Wed, 26 Oct 2022 at 13:18, Garth Ilsley <<a href="mailto:ilsley@ebi.ac.uk">ilsley@ebi.ac.uk</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi Julie,<br>
<br>
Indeed, you noticed quickly!<br>
<br>
No problem, we can generate a tabix file and add it to the ftp. Would it <br>
be OK if we aimed for the end of the week?<br>
<br>
Garth<br>
<br>
On 2022-10-26 12:38, Julie Sullivan wrote:<br>
> I see the file is back in<br>
> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" rel="noreferrer" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>
> <br>
> Thanks so much!<br>
> <br>
> Can I be a difficult customer and also ask for the tabix file also?<br>
> (the TBI file).<br>
> <br>
> "Homo_sapiens.GRCh38.motif_features.gff.gz.tbi"<br>
> <br>
> Apologies, I should have asked for this file in my first email, but I<br>
> forgot I needed both! Thanks!!<br>
> <br>
> On Mon, 24 Oct 2022 at 14:16, Julie Sullivan<br>
> <<a href="mailto:julie.sullivan@gmail.com" target="_blank">julie.sullivan@gmail.com</a>> wrote:<br>
> <br>
>> Hi Garth!<br>
>> <br>
>> Yes, that's the file I need! I will check back in a week.<br>
>> <br>
>> Thanks so much!! :)<br>
>> <br>
>> On Mon, 24 Oct 2022 at 12:34, <<a href="mailto:ilsley@ebi.ac.uk" target="_blank">ilsley@ebi.ac.uk</a>> wrote:<br>
>> <br>
>>> Dear Julie,<br>
>>> <br>
>>> Thank you for letting us know. The file<br>
>>> homo_sapiens.GRCh38.motif_features.gff.gz is missing from this<br>
>>> directory, and we plan to restore it for 107. Unfortunately, we<br>
>>> need to regenerate this file, which will take about a week. The<br>
>>> file for 108 is also missing (a known issue), but this one will be<br>
>>> fixed more quickly, hopefully by tomorrow.<br>
>>> <br>
>>> Is homo_sapiens.GRCh38.motif_features.gff.gz the file you are<br>
>>> looking for? (We aren’t planning on placing the chromosome<br>
>>> specific files there, as these duplicate information from the main<br>
>>> file, and we aim to avoid unnecessary disk storage.)<br>
>>> <br>
>>> Best wishes,<br>
>>> <br>
>>> Garth<br>
>>> <br>
>>> From: Dev <<a href="mailto:dev-bounces@ensembl.org" target="_blank">dev-bounces@ensembl.org</a>> On Behalf Of Julie Sullivan<br>
>>> Sent: 24 October 2022 11:52<br>
>>> To: <a href="mailto:dev@ensembl.org" target="_blank">dev@ensembl.org</a><br>
>>> Subject: [ensembl-dev] missing Motif features file for v107 -<br>
>>> Homo_sapiens.GRCh38.motif_features.gff.gz<br>
>>> <br>
>>> I see all the files in the previous release:<br>
>>> <br>
>>> <br>
>> <br>
> <a href="https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/" rel="noreferrer" target="_blank">https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/</a><br>
>>> <br>
>>> But I don't see them in version 107:<br>
>>> <br>
>>> <br>
>> <br>
> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" rel="noreferrer" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>
>>> [1]<br>
>>> <br>
>>> Have they been moved? If not, can they be restored?<br>
>>> <br>
>>> Thanks!<br>
>>> <br>
>>> Julie_______________________________________________<br>
>>> Dev mailing list    <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
>>> Posting guidelines and subscribe/unsubscribe info:<br>
>>> <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" rel="noreferrer" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>
>>> Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank">http://www.ensembl.info/</a><br>
> <br>
> <br>
> Links:<br>
> ------<br>
> [1] <br>
> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" rel="noreferrer" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>
> _______________________________________________<br>
> Dev mailing list    <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
> Posting guidelines and subscribe/unsubscribe info:<br>
> <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" rel="noreferrer" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>
> Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank">http://www.ensembl.info/</a><br>
<br>
_______________________________________________<br>
Dev mailing list    <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>
Posting guidelines and subscribe/unsubscribe info: <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" rel="noreferrer" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>
Ensembl Blog: <a href="http://www.ensembl.info/" rel="noreferrer" target="_blank">http://www.ensembl.info/</a><br>
</blockquote></div>