<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"><head><meta http-equiv=Content-Type content="text/html; charset=utf-8"><meta name=Generator content="Microsoft Word 15 (filtered medium)"><style><!--
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</o:shapelayout></xml><![endif]--></head><body lang=EN-GB link=blue vlink=purple style='word-wrap:break-word'><div class=WordSection1><p class=MsoNormal><span style='mso-fareast-language:EN-US'>Hi Julie,<o:p></o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'>The tabix file for 107 is now available. Please let us know if there are any further issues.<o:p></o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'>Best wishes,<o:p></o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'>Garth<o:p></o:p></span></p><p class=MsoNormal><span style='mso-fareast-language:EN-US'><o:p> </o:p></span></p><div style='border:none;border-top:solid #E1E1E1 1.0pt;padding:3.0pt 0cm 0cm 0cm;font-size:pt'><p class=MsoNormal><b>From:</b> Dev <dev-bounces@ensembl.org> <b>On Behalf Of </b>Julie Sullivan<br><b>Sent:</b> 26 October 2022 16:45<br><b>To:</b> Ensembl developers list <dev@ensembl.org><br><b>Subject:</b> Re: [ensembl-dev] missing Motif features file for v107 - Homo_sapiens.GRCh38.motif_features.gff.gz<o:p></o:p></p></div><p class=MsoNormal><o:p> </o:p></p><div><div><p class=MsoNormal><span style='font-size:12.0pt;font-family:"Trebuchet MS",sans-serif'>That would be perfect. :) thanks so much!<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><div><div><p class=MsoNormal>On Wed, 26 Oct 2022 at 13:18, Garth Ilsley <<a href="mailto:ilsley@ebi.ac.uk">ilsley@ebi.ac.uk</a>> wrote:<o:p></o:p></p></div><blockquote style='border:none;border-left:solid #CCCCCC 1.0pt;padding:0cm 0cm 0cm 6.0pt;margin-left:4.8pt;margin-top:5.0pt;margin-right:0cm;margin-bottom:5.0pt'><p class=MsoNormal>Hi Julie,<br><br>Indeed, you noticed quickly!<br><br>No problem, we can generate a tabix file and add it to the ftp. Would it <br>be OK if we aimed for the end of the week?<br><br>Garth<br><br>On 2022-10-26 12:38, Julie Sullivan wrote:<br>> I see the file is back in<br>> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>> <br>> Thanks so much!<br>> <br>> Can I be a difficult customer and also ask for the tabix file also?<br>> (the TBI file).<br>> <br>> "Homo_sapiens.GRCh38.motif_features.gff.gz.tbi"<br>> <br>> Apologies, I should have asked for this file in my first email, but I<br>> forgot I needed both! Thanks!!<br>> <br>> On Mon, 24 Oct 2022 at 14:16, Julie Sullivan<br>> <<a href="mailto:julie.sullivan@gmail.com" target="_blank">julie.sullivan@gmail.com</a>> wrote:<br>> <br>>> Hi Garth!<br>>> <br>>> Yes, that's the file I need! I will check back in a week.<br>>> <br>>> Thanks so much!! :)<br>>> <br>>> On Mon, 24 Oct 2022 at 12:34, <<a href="mailto:ilsley@ebi.ac.uk" target="_blank">ilsley@ebi.ac.uk</a>> wrote:<br>>> <br>>>> Dear Julie,<br>>>> <br>>>> Thank you for letting us know. The file<br>>>> homo_sapiens.GRCh38.motif_features.gff.gz is missing from this<br>>>> directory, and we plan to restore it for 107. Unfortunately, we<br>>>> need to regenerate this file, which will take about a week. The<br>>>> file for 108 is also missing (a known issue), but this one will be<br>>>> fixed more quickly, hopefully by tomorrow.<br>>>> <br>>>> Is homo_sapiens.GRCh38.motif_features.gff.gz the file you are<br>>>> looking for? (We aren’t planning on placing the chromosome<br>>>> specific files there, as these duplicate information from the main<br>>>> file, and we aim to avoid unnecessary disk storage.)<br>>>> <br>>>> Best wishes,<br>>>> <br>>>> Garth<br>>>> <br>>>> From: Dev <<a href="mailto:dev-bounces@ensembl.org" target="_blank">dev-bounces@ensembl.org</a>> On Behalf Of Julie Sullivan<br>>>> Sent: 24 October 2022 11:52<br>>>> To: <a href="mailto:dev@ensembl.org" target="_blank">dev@ensembl.org</a><br>>>> Subject: [ensembl-dev] missing Motif features file for v107 -<br>>>> Homo_sapiens.GRCh38.motif_features.gff.gz<br>>>> <br>>>> I see all the files in the previous release:<br>>>> <br>>>> <br>>> <br>> <a href="https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/" target="_blank">https://ftp.ensembl.org/pub/release-106/regulation/homo_sapiens/MotifFeatures/</a><br>>>> <br>>>> But I don't see them in version 107:<br>>>> <br>>>> <br>>> <br>> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>>>> [1]<br>>>> <br>>>> Have they been moved? If not, can they be restored?<br>>>> <br>>>> Thanks!<br>>>> <br>>>> Julie_______________________________________________<br>>>> Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>>>> Posting guidelines and subscribe/unsubscribe info:<br>>>> <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>>>> Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br>> <br>> <br>> Links:<br>> ------<br>> [1] <br>> <a href="https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/" target="_blank">https://ftp.ensembl.org/pub/release-107/regulation/homo_sapiens/MotifFeatures/</a><br>> _______________________________________________<br>> Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>> Posting guidelines and subscribe/unsubscribe info:<br>> <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>> Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><br><br>_______________________________________________<br>Dev mailing list <a href="mailto:Dev@ensembl.org" target="_blank">Dev@ensembl.org</a><br>Posting guidelines and subscribe/unsubscribe info: <a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org" target="_blank">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a><br>Ensembl Blog: <a href="http://www.ensembl.info/" target="_blank">http://www.ensembl.info/</a><o:p></o:p></p></blockquote></div></div></body></html>