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<p>Hi Jens,</p>
<p>The genotype data for mouse is not available via the REST API
anymore.</p>
<p>The genotypes available on the website (<a moz-do-not-send="true"
href="http://www.ensembl.org/Mus_musculus/Variation/Sample?db=core;mr=6:39642997-39642997;r=6:39642980-39643002;v=rs242617365;vdb=variation;vf=22546329">link</a>)
are imported from the Mouse Genome Project, the VCF files can be
found here: <a moz-do-not-send="true"
href="http://ftp.ensembl.org/pub/data_files/mus_musculus/GRCm39/variation_genotype/"
class="moz-txt-link-freetext">http://ftp.ensembl.org/pub/data_files/mus_musculus/GRCm39/variation_genotype/</a><br>
</p>
<p><br>
</p>
<p>Best wishes,</p>
<p>Diana<br>
</p>
<p><br>
</p>
<p><br>
</p>
<div class="moz-cite-prefix">On 15/11/2022 14:35, Hansen, Jens
Matthias, Dr. wrote:<br>
</div>
<blockquote type="cite"
cite="mid:20221115143809.E491162CECF_373A451B@hh-mx3.ebi.ac.uk">
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11pt; color: #000000">
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<div>Hi,<br>
</div>
<div>
<!--StartFragment-->
<pre>I am querying mouse variation sample genotypes from <a href="https://rest.ensembl.org/" data-mce-href="https://rest.ensembl.org/" moz-do-not-send="true" class="moz-txt-link-freetext">https://rest.ensembl.org/</a> using e.g. <a class="moz-txt-link-rfc2396E" href="https://rest.ensembl.org/variation/mouse/rs242617365?content-type=application/json;genotypes=1"><https://rest.ensembl.org/variation/mouse/rs242617365?content-type=application/json;genotypes=1></a>, but I get empty results
for the genotypes. However, I can see the sample genotypes on the webportal <a class="moz-txt-link-rfc2396E" href="http://www.ensembl.org/Mus_musculus/Variation/Sample?db=core;mr=6:39642997-39642997;r=6:39642980-39643002;v=rs242617365;vdb=variation;vf=22546329"><http://www.ensembl.org/Mus_musculus/Variation/Sample?db=core;mr=6:39642997-39642997;r=6:39642980-39643002;v=rs242617365;vdb=variation;vf=22546329></a>.
I know, this type of REST request worked in the past. Is the genotype data for the mouse no longer accessible via the REST server?
Can anyone help?
Thank you.
With best regards,
Jens
</pre>
<!--EndFragment--> </div>
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<div><span style="font-size:9pt"><strong>Dr. rer. nat. Jens
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<div style="font: 7pt Arial, sans-serif;"> Helmholtz Zentrum
München Deutsches Forschungszentrum für Gesundheit und Umwelt
(GmbH), Ingolstädter Landstr. 1, 85764 Neuherberg,
<a class="moz-txt-link-abbreviated" href="http://www.helmholtz-munich.de">www.helmholtz-munich.de</a> <br>
Geschäftsführung: Prof. Dr. med. Dr. h.c. Matthias Tschöp,
Kerstin Günther, Daniela Sommer (kom.) |
Aufsichtsratsvorsitzende: Prof. Dr. Veronika von Messling |
Registergericht: Amtsgericht München HRB 6466 | USt-IdNr. DE
129521671
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<br>
<div style="font: 7pt Arial, sans-serif;"> Helmholtz Zentrum
München Deutsches Forschungszentrum für Gesundheit und
Umwelt (GmbH), Ingolstädter Landstr. 1, 85764 Neuherberg,
<a class="moz-txt-link-abbreviated" href="http://www.helmholtz-munich.de">www.helmholtz-munich.de</a> <br>
Geschäftsführung: Prof. Dr. med. Dr. h.c. Matthias Tschöp,
Kerstin Günther, Daniela Sommer (kom.) |
Aufsichtsratsvorsitzende: Prof. Dr. Veronika von Messling |
Registergericht: Amtsgericht München HRB 6466 | USt-IdNr. DE
129521671
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