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Thank you for the answer.</div>
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The question though is, does the GRCH37 GFF file contain the MANE_SELECT tag for the transcripts that do match?</div>
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Kind regards</div>
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Beat Wolf</div>
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</span></b><span style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont" data-lt-sig="">University of Applied Sciences and Arts Western Switzerland ▪ Pérolles 80 ▪ CH-1700 Fribourg<br>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>Von:</b> Jose Gonzalez <jmgonzalez@ebi.ac.uk><br>
<b>Gesendet:</b> Donnerstag, 14. September 2023 11:02<br>
<b>An:</b> Ensembl developers list <dev@ensembl.org>; Wolf Beat <Beat.Wolf@hefr.ch><br>
<b>Betreff:</b> Re: [ensembl-dev] Declaration of Intentions for Ensembl release 111 and Ensembl Genomes release 58</font>
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<div>Sie erhalten nicht oft eine E-Mail von jmgonzalez@ebi.ac.uk. <a href="https://aka.ms/LearnAboutSenderIdentification">
Erfahren Sie, warum dies wichtig ist</a></div>
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<p>Hi Beat,</p>
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<p>As far as I know, the only update is the RefSeq annotation in our GRCh37 otherfeatures database, which has been imported using the file below:<br>
<a class="x_moz-txt-link-freetext" href="https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_genomic.gff.gz">https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.25_GRCh37.p13/GCF_000001405.25_GRCh37.p13_genomic.gff.gz</a><br>
<br>
The Ensembl GRCh37 annotation hasn't been updated, so only a fraction of the RefSeq MANE v1.0 transcripts will be exactly matched by Ensembl transcripts.</p>
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<p>Thanks,<br>
Jose<br>
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<div class="x_moz-cite-prefix">On 13/09/2023 15:31, Wolf Beat wrote:<br>
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The mane 1.0 inclusion into grch37 sounds great. Related to this, will the gff file for grch37 also include this information? I know the grch38 does already do that.</div>
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Kind regards</div>
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Beat Wolf</div>
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<p style="margin-top:0px; margin-bottom:0px"><b><span data-lt-sig="" style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont">Dr Beat Wolf, PhD ▪ Assistant Professor ▪ Member of iCoSys Institute<br>
</span></b><span data-lt-sig="" style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont">University of Applied Sciences and Arts Western Switzerland ▪ Pérolles 80 ▪ CH-1700 Fribourg<br>
Member of University of Applied Sciences of Western Switzerland<br>
</span><span lang="FR" style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont; color:blue"><a href="https://eia-fr.ch/" target="_blank" rel="noopener noreferrer" style="margin:0px"><span data-lt-sig="" lang="EN-GB" style="margin:0px">https://www.heia-fr.ch</span></a></span><span style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont; color:blue"> </span><span data-lt-sig="" style="margin:0px; font-size:8pt; font-family:Arial,sans-serif,serif,EmojiFont">▪ <a href="https://icosys.ch/" target="_blank" rel="noopener noreferrer" data-lt-sig="" class="x_moz-txt-link-freetext" style="margin:0px">https://icosys.ch/</a></span></p>
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<div id="x_divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" color="#000000" style="font-size:11pt"><b>Von:</b> Dev
<a class="x_moz-txt-link-rfc2396E" href="mailto:dev-bounces@ensembl.org"><dev-bounces@ensembl.org></a> im Auftrag von Benjamin Moore
<a class="x_moz-txt-link-rfc2396E" href="mailto:bmoore@ebi.ac.uk"><bmoore@ebi.ac.uk></a><br>
<b>Gesendet:</b> Mittwoch, 13. September 2023 16:15<br>
<b>An:</b> Ensembl developers list <a class="x_moz-txt-link-rfc2396E" href="mailto:dev@ensembl.org">
<dev@ensembl.org></a><br>
<b>Betreff:</b> [ensembl-dev] Declaration of Intentions for Ensembl release 111 and Ensembl Genomes release 58</font>
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<div class="" style="margin:0cm 0cm 0.0001pt">Dear all,</div>
<div class="" style="margin:0cm 0cm 0.0001pt"> </div>
<div class="" style="margin:0cm 0cm 0.0001pt">Ensembl release 111 and Ensembl Genomes release 58 are scheduled for November 2023.</div>
<div class="" style="margin:0cm 0cm 0.0001pt"> </div>
<div class="" style="margin:0cm 0cm 0.0001pt">Please find the summary of the declarations of intentions in our blog:</div>
<div class="" style="margin:0cm 0cm 0.0001pt"><a class="x_x_moz-txt-link-freetext x_moz-txt-link-freetext" href="https://www.ensembl.info/2023/09/13/whats-coming-in-ensembl-111-ensembl-genomes-58/">https://www.ensembl.info/2023/09/13/whats-coming-in-ensembl-111-ensembl-genomes-58/</a><br>
</div>
<div class="" style="margin:0cm 0cm 0.0001pt"> </div>
<div class="" style="margin:0cm 0cm 0.0001pt"><span class="" style="background-color:white">As with all releases, please note that these are intentions and are not guaranteed to make it into the releases. </span></div>
<div class="" style="margin:0cm 0cm 0.0001pt"> </div>
<div class="" style="margin:0cm 0cm 0.0001pt">Best wishes</div>
<div class="" style="margin:0cm 0cm 0.0001pt"> </div>
<div class="" style="margin:0cm 0cm 0.0001pt">Ben</div>
<div class="" style="margin:0cm 0cm 0.0001pt">On behalf of the Ensembl team</div>
<pre class="x_x_moz-signature" cols="72">--
Dr. Ben Moore (he/him)
Ensembl Outreach Manager
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK
<a class="x_x_moz-txt-link-abbreviated x_moz-txt-link-freetext" href="mailto:bmoore@ebi.ac.uk">bmoore@ebi.ac.uk</a>
+44 (0)1223 494265</pre>
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<pre class="x_moz-quote-pre">_______________________________________________
Dev mailing list <a class="x_moz-txt-link-abbreviated" href="mailto:Dev@ensembl.org">Dev@ensembl.org</a>
Posting guidelines and subscribe/unsubscribe info: <a class="x_moz-txt-link-freetext" href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</a>
Ensembl Blog: <a class="x_moz-txt-link-freetext" href="http://www.ensembl.info/">http://www.ensembl.info/</a>
</pre>
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<pre class="x_moz-signature" cols="72">--
Dr Jose M. Gonzalez
GENCODE Bioinformatician (Genome Interpretation Team)
European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton, CB10 1SD, UK</pre>
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