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<p class="MsoNormal"><span style="mso-fareast-language:EN-US">Hi Leanne,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US">Thank you so much for this info. Looking forward. Do you know if MT genes will be better annotated? In this version, we have this situation:
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US">NC_001941.1 RefSeq gene 2745 3699 . + .
<b>ID=gene-KEF53_p13</b>;Dbxref=GeneID:808249;<b>Name=ND1</b>;gbkey=Gene;gene=ND1;gene_biotype=protein_coding;locus_tag=KEF53_p13<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US">Where ID=gene-KEF53_p13 is present instead of the name ND1 (as well as for many other genes).
<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US">Thank you again<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US">Alessia<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-IN" style="mso-fareast-language:EN-US"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-US">From:</span></b><span lang="EN-US"> Dev <dev-bounces@ensembl.org>
<b>On Behalf Of </b>Leanne Haggerty<br>
<b>Sent:</b> 04 November 2024 12:04<br>
<b>To:</b> Ensembl developers list <dev@ensembl.org><br>
<b>Cc:</b> helpdesk@ensembl.org<br>
<b>Subject:</b> Re: [ensembl-dev] question ovis aries<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hi Alessia<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">The Ensembl annotation of ARS-UI_Ramb_v3.0 is not available yet, and so the browser displays the older version, ARS-UI_Ramb_v2. Annotation of the latest assembly is in progress and data will be available via our new website,
<a href="http://beta.ensembl.org">beta.ensembl.org</a> before the end of the year. In the meantime, we provide annotation data for 21 sheep assemblies, including many different breeds, in case this is useful for you:<o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:black"><a href="https://beta.ensembl.org/species-selector/search?query=sheep"><span style="color:#272727;text-decoration:none">Species selector</span></a></span><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:8.5pt;font-family:"Helvetica",sans-serif;color:black"><a href="https://beta.ensembl.org/species-selector/search?query=sheep"><span style="color:gray;text-decoration:none">beta.ensembl.org</span></a></span><span style="font-size:8.5pt;font-family:"Helvetica",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="color:black"><a href="https://beta.ensembl.org/species-selector/search?query=sheep"><span style="font-family:"Helvetica",sans-serif;text-decoration:none"><img border="0" width="36" height="36" style="width:.375in;height:.375in" id="Picture_x0020_1" src="cid:image001.png@01DB2ECE.F3217B40"></span></a></span><span style="font-family:"Helvetica",sans-serif"><o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">I hope this helps<o:p></o:p></p>
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<p class="MsoNormal">All the best<o:p></o:p></p>
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<p class="MsoNormal">Leanne<o:p></o:p></p>
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<br>
<o:p></o:p></p>
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<p class="MsoNormal">On 4 Nov 2024, at 10:46, Alessia Virzì <<a href="mailto:alessia.virzi@kuleuven.be">alessia.virzi@kuleuven.be</a>> wrote:<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
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<p class="MsoNormal">Hello,<o:p></o:p></p>
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<p class="MsoNormal"> <o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN">I would like to know why in the ensemble website the ovis aries genome<span class="apple-converted-space"> </span></span><a href="https://www.ensembl.org/Ovis_aries_rambouillet/Info/Index"><span lang="EN-IN" style="color:#0563C1">Ovis_aries_rambouillet
- Ensembl genome browser 113</span></a><span class="apple-converted-space"> </span><span lang="EN-IN">refer to the version:<span class="apple-converted-space"> </span>ARS-UI-Ramb-v2</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN">While in the NIH NCBI website the reccomanded version is the ARS-UI_Ramb_v3.0<a href="https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_016772045.2/"><span style="color:#0563C1">https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_016772045.2/</span></a></span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN">Any insides would be great!</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN">Thanks</span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN"> </span><o:p></o:p></p>
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<p class="MsoNormal"><span lang="EN-IN">Alessia</span><o:p></o:p></p>
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<p class="MsoNormal"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif">_______________________________________________<br>
Dev mailing list </span><a href="mailto:Dev@ensembl.org"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#0563C1">Dev@ensembl.org</span></a><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif"><br>
Posting guidelines and subscribe/unsubscribe info:<span class="apple-converted-space"> </span></span><a href="https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#0563C1">https://lists.ensembl.org/mailman/listinfo/dev_ensembl.org</span></a><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif"><br>
Ensembl Blog:<span class="apple-converted-space"> </span></span><a href="http://www.ensembl.info/"><span style="font-size:9.0pt;font-family:"Helvetica",sans-serif;color:#0563C1">http://www.ensembl.info/</span></a><o:p></o:p></p>
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